SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5624

Length: 231 nt

UniGene Fasta

>biog3_v1.0_unigene5624
CAGCTTATGAAGACAGGATATGTCCGACTATCGGCAGTTCTCTACAGACTGCTGCAACAGACATGGAAAATGTCATCATTGCATTGGAGGATCAAGATGTTCATTCTTACATTTTGGACTTACGCAATAATCCTGGAGGGTTAGTTAAGGCTGGACTTGACGTCGCACAGATATGGTTGGATGGAAATGAAACTCTTGTTAACACCATTGATCGAGATGGTAATATGTTGC

Ace file of the UniGene biog3_v1.0_unigene5624

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11434	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	carboxyl terminal protease-like protein [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	peptidase s41 family protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	73%
Blast2go	serine-type peptidase activity	GO:0008236	Molecular Function	73%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	73%

Source	InterPros	Term	Type	Identity
Sma3	PDZ domain	IPR001478	-	-
Sma3	Interphotoreceptor retinol-binding	IPR005151	-	-
Sma3	Peptidase S41A, C-terminal peptidase	IPR004447	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQI3

Fln msg: Distance to subject end: 147 aas, your sequence is shorter than subject: 76 - 377

Fln protein: AYEDRICPTIGSSLQTAATDMENVIIALEDQDVHSYILDLRNNPGGLVKAGLDVAQIWLDGNETLVNTIDRDGNML

Protein Length: 77

Fln nts: CAGCTTATGAAGACAGGATATGTCCGACTATCGGCAGTTCTCTACAGACTGCTGCAACAGACATGGAAAATGTCATCATTGCATTGGAGGATCAAGATGTTCATTCTTACATTTTGGACTTACGCAATAATCCTGGAGGGTTAGTTAAGGCTGGACTTGACGTCGCACAGATATGGTTGGATGGAAATGAAACTCTTGTTAACACCATTGATCGAGATGGTAATATGTTGC

Fln Alignment:

Contig5624___QTAATDMENVIIALEDQDVHSYILDLRNNPGGLVKAGLDVAQIWLDGNETLVNTIDRDGNML
A9NQI3_________________QTAAIDMENVIIALEDQDVHSYILDLRNNPGGLVKAGLDVAQIWLDGNETLVNTIDRDGNML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain