SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5600

Length: 924 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5600 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7870	11/14
SustainPine v2.0	sp_v2.0_unigene14319	3/14

Source	Descriptions	Term	Type	Identity
AutoFact	PsbP domain-containing protein 5 [Arabidopsis thaliana] sp\|P82715.3\|PPD5_ARATH RecName: Full=PsbP domain-containing protein 5, chloroplastic; AltName: Full=OEC23-like protein 6; AltName: Full=PsbP-related thylakoid lumenal protein 4; AltName: Full=Thylako	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis	GO:0015979	Biological Process	75%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	75%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	75%
Blast2go	extrinsic to membrane	GO:0019898	Cellular Component	75%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	75%
Blast2go	oxygen evolving complex	GO:0009654	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mog1/PsbP, alpha/beta/alpha sandwich	IPR016123	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P143

Fln msg: your sequence is shorter than subject: 276 - 312

Fln protein: KHKQFTFNFKGDLKAVPENRDMTVLGSNKDYICRRDLLLYGFWGPISFLFAAESGRALDTDKIFEEPEYGLQVDEINGYTFSYPLNVPKRQYKLKWIESRKPERYSSAAPLSADARQRIVSERLDIKDNLVISVSIGPPNNRLLTSKDKNTWDAKDVAESVLSDKSTARVSTGERVTEKSVINVHSDKVDGEPYWYYEYIAQKSPTTLVQQRDVFRHSLAVTVEREGYLYSLNASALSPSWNTMEPLLRETISSFRLTPPTQNYVPPYKDPWRIW*

Protein Length: 277

Fln nts: GAAAGCACAAACAATTTACTTTCAACTTTAAAGGGGATTTGAAGGCAGTGCCAGAGAACAGAGATATGACAGTGTTAGGATCAAATAAAGATTATATCTGTCGGAGGGATTTGCTATTGTACGGGTTTTGGGGGCCAATATCATTTTTATTTGCTGCTGAGTCTGGGAGAGCTCTTGATACAGATAAAATATTTGAAGAGCCAGAATATGGTTTACAGGTTGATGAGATAAATGGTTACACATTTTCTTATCCTCTGAATGTACCCAAACGACAATACAAATTGAAGTGGATCGAGTCTAGAAAGCCAGAACGATATTCTTCAGCTGCGCCCTTATCTGCTGATGCCCGGCAGCGCATTGTTTCTGAACGTCTAGACATCAAAGACAACCTTGTTATTTCTGTTTCGATAGGTCCTCCAAACAATCGCCTTCTGACTTCGAAGGACAAGAACACATGGGATGCAAAAGATGTCGCCGAGTCTGTTCTTTCTGACAAATCTACTGCGCGTGTGTCAACAGGAGAGCGTGTGACAGAAAAATCAGTAATTAATGTTCATAGTGATAAAGTTGATGGTGAGCCATACTGGTATTATGAGTATATTGCACAGAAGTCACCAACGACATTAGTCCAACAAAGAGATGTTTTTCGCCACTCTTTAGCAGTTACAGTTGAAAGAGAAGGATACTTGTATTCTCTGAATGCTTCTGCGCTTAGTCCAAGTTGGAATACTATGGAACCTTTGCTTAGGGAAACCATTTCCTCATTTCGTCTGACCCCACCAACACAGAATTATGTTCCTCCCTATAAAGATCCTTGGAGAATTTGGTGA___CCAACACAGAATTATGTTCCTCCTTAAGATCCTTGGACAATTTGGTGACCAGCACCATAGACACCAGCTGAGTTATGTGTGTACTATATACATT

Fln Alignment:

Contig5600___KHKQFT-----FNFKGDLKAVPENRDMTVLGSNKDYICRRDLLLYGFWGPISFLFAAESGRALDTDKIFEEPEYGLQVDEINGYTFSYPLNVPKRQYKLKWIESRKPERYSSAAPLSADARQRIVSERLDIKDNLVISVSIGPPNNRLLTSKDKNTWDAKDVAESVLSDKSTARVSTGERVTEKSVINVHSDKVDGEPYWYYEYIAQKSPTTLVQQRDVFRHSLAVTVEREGYLYSLNASALSPSWNTMEPLLRETISSFRLTPPTQNYVPPYKDPWRIW
A9P143_________________KHKQSTYKVKSFNFQGDLKTVLENRDMTVLGSNKNYICRRDLLMYGFWGPISFLFASESGRALDMDKIDEEPEYGLQVDETNAYTFSYPLNVPKRQYKLKWIESRKPERYSSAAPLSADARQRIVSERLDIKDNLVISVSIGPPNYRFLTSKDKNTWDAEDVADSVLSDKSTARVSTGERVAEKSVINAHSNKVAGEPYWYYEYIAQKSPTTSGQQRDVFRHSLAVTAEREGYLYSLNASTLSPSWNTMEPLLRETISSFRLTPPTQNYVPPYKDPWRIW

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
193	33			66	1.0
194	66			33	1.0
250	16			83	0.994512
335	80		20		0.995493
366		80		20	0.995493
497	20		80		0.995493
527	80	20			0.995493
529	80			20	0.995493
548		16		83	0.994512
549	16		83		0.994512
692	14	85			0.993533
704		85		14	0.993533
705	83		16		0.994512
737		20		80	0.995493
738	20			80	0.995493
843	25			75	0.996473
844		25	75		0.996473
847		75		25	0.996473
918		33		66	0.997452
919	33		66		0.997452
921			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain