SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5586

Length: 2042 nt

UniGene Fasta

>biog3_v1.0_unigene5586
GCGTTATGGGCGGCCTCATGGTCATGGCTGCCCTTCTGGGCCTCTCCACTGGCTACTTCGGCGCACTTCCCGTCCCGGGCCTGCCCGCGGCCCTGCTGCCGACGTCGTTTGGTTTGTTCCCTAGGCGGAACGGCCGGAAGAAGAAGGTTAGGGTTTACATGGATGGATGCTTCGACCTGATGCACTACGGCCACGCCAATGCTCTCAGGCAGGCGCGCGCGCTCGGTGACGAGCTGGTCGTTGGCGTGGTCAGTGACGAGGAAATTATAGCCAATAAAGGACCCCCGGTCTTGTCTCTCGAAGAAAGGATGGTGATGGTGAGTGGTTTGAAGTGGGTCGATGAAGTTATAGCTGATGCACCATATGCAATAAATGAAAATTTCATGAAGAAGTTGTTTGACGAGTATAATATTGATTATATTATACACGGAGATGACCCATGTCTGCTCCCTGATGGTAGTGATGCATATGCCCTTGCCAAGAAGGCTGGACGGTATAAACAGATCAAACGTACTGAGGGTGTTTCTAGTACTGATATAGTTGGTCGAATGCTACTTTGTGTGAGGGACAGGCCAAACAGTGACAATCATAATCACTCTAATTTGCAGCGGCAATTTAGCCATGGTAATAGTCACAATGATGATGGTGGCAGCTCTTCAAGCGGAACTCGAGTTTCCCATTTTCTACCTACATCTCGCAGGATTGTGCAGTTCTCAAATGGAAAGGGTCCTGGACCAGATGCACGCATAGTCTATATTGATGGTGCTTTTGATCTTTTTCATGCTGGACATGTAGAGATACTTAAATATGCAAGGAACCTTGGAGATTTTTTACTTGTTGGCCTTCATACAGACCAAATTATCAGTGCACATAGAGGACCTCATCATCCAATCATGAATCTCCATGAGCGTAGTCTTAGTGTGCTAGCATGCCGATATGTGGATGAAGTTATAATTGGTGCCCCTTGGGAGGTCACCAAAGATATGATTACGACGTTCAATATTTCTTTGGTTGTGCATGGAACTGTTGCTGAGAACAATGACTTATTAAATGGGGATGTTGATCCTTATTCAGCTCCTAAGAGCATGGGGATTTTTAAGATTATAGAGAGCCCGAGAAATATAACAACTACATCAATCATGAAAAGGATAGTTGCGAATCATGAAGCTTTCAAGAAACGGAATGAGAAGAAAATTGAAAGCGAGAGGAGGTATTATGAAGATAAAACCTACGTTGGCAGTGACTGACGTTTTTTAGCCCTCATCCTCGTCCATTTACGTTAATGTTTACCTGTTCCACGTGCTGTTGTCTCACTACTGCCCAACCCTATCATACCTTATTGAAAGGTGTTTGGGGGCATGTGTTAACTGGGTCATTTTATTCGGTAACCTTGACGATTTATTTTATCATCCCGGGAAAATCGGAAAGAAATGATCACTAACACAATTTTAGGGCTTTATGTACAATTGCACGAGAGTTTTAACCATTTAAGTTACTGTGTCTTCTATATTTGCTGTATTGATATCTGTATTCAACAATTTTACATGAAGATAGTTGCAAGGATATTTTGTTCATTTATGGAAGGATATCTTACAAAAAGGGTTGTCTAGATTTGGTTTTTGGTCGGAGTTTATAATATAACAGATTGGATGGGTCGGTTTAGTTTACCTTGTACTCGAAGTTCTGAAGGCTGCAATGAAAGAAGACCGTTTGTGCCAACAATCTTCCTCCTTAGATGGCACTTCAAGAGTGGTTTGTTCGCTGTGGTTGTATATGATCTGCCCAGTTCAGGTCAGGTCATATTTTTGATGAGCTATAGCAAGTTGACCGTGTATTTAGTTTCAATCTGGATTGGTATAGACAAGTCATTTCAGTTTTGCTACAAAGACGGCCTTACATTATCTTTGTAGTCTGATAGGTGCAAGGGCCATATGGAGGGCGACACAAAACAGTAACTTATCTGCTTTGTAAAAAGATTTTACTTGACGGAATTTTATGACATTATCTCTAGAGCAAGAGTAACATGTTAACCTGGAAACATT

Ace file of the UniGene biog3_v1.0_unigene5586

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16614	10/53
SustainPine v2.0	sp_v2.0_unigene61173	43/53

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoethanolamine cytidylyltransferase [Hordeum vulgare subsp. vulgare]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	81%
Blast2go	ethanolamine-phosphate cytidylyltransferase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ethanolamine-phosphate cytidylyltransferase.	EC:2.7.7.14	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Phosphonate and phosphinate metabolism	00440	85%
Blast2go	Glycerophospholipid metabolism	00564	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	ethanolamine-phosphate cytidylyltransferase activity	GO:0004306	Molecular Function	0.0	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HMQ6

Fln msg: atg_distance in limit (1-15): atg_distance = 6,

Fln protein: MGGLMVMAALLGLSTGYFGALPVPGLPAALLPTSFGLFPRRNGRKKKVRVYMDGCFDLMHYGHANALRQARALGDELVVGVVSDEEIIANKGPPVLSLEERMVMVSGLKWVDEVIADAPYAINENFMKKLFDEYNIDYIIHGDDPCLLPDGSDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRDRPNSDNHNHSNLQRQFSHGNSHNDDGGSSSSGTRVSHFLPTSRRIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILKYARNLGDFLLVGLHTDQIISAHRGPHHPIMNLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNISLVVHGTVAENNDLLNGDVDPYSAPKSMGIFKIIESPRNITTTSIMKRIVANHEAFKKRNEKKIESERRYYEDKTYVGSD*

Protein Length: 415

Fln nts: GCGTT_-_ATGGGCGGCCTCATGGTCATGGCTGCCCTTCTGGGCCTCTCCACTGGCTACTTCGGCGCACTTCCCGTCCCGGGCCTGCCCGCGGCCCTGCTGCCGACGTCGTTTGGTTTGTTCCCTAGGCGGAACGGCCGGAAGAAGAAGGTTAGGGTTTACATGGATGGATGCTTCGACCTGATGCACTACGGCCACGCCAATGCTCTCAGGCAGGCGCGCGCGCTCGGTGACGAGCTGGTCGTTGGCGTGGTCAGTGACGAGGAAATTATAGCCAATAAAGGACCCCCGGTCTTGTCTCTCGAAGAAAGGATGGTGATGGTGAGTGGTTTGAAGTGGGTCGATGAAGTTATAGCTGATGCACCATATGCAATAAATGAAAATTTCATGAAGAAGTTGTTTGACGAGTATAATATTGATTATATTATACACGGAGATGACCCATGTCTGCTCCCTGATGGTAGTGATGCATATGCCCTTGCCAAGAAGGCTGGACGGTATAAACAGATCAAACGTACTGAGGGTGTTTCTAGTACTGATATAGTTGGTCGAATGCTACTTTGTGTGAGGGACAGGCCAAACAGTGACAATCATAATCACTCTAATTTGCAGCGGCAATTTAGCCATGGTAATAGTCACAATGATGATGGTGGCAGCTCTTCAAGCGGAACTCGAGTTTCCCATTTTCTACCTACATCTCGCAGGATTGTGCAGTTCTCAAATGGAAAGGGTCCTGGACCAGATGCACGCATAGTCTATATTGATGGTGCTTTTGATCTTTTTCATGCTGGACATGTAGAGATACTTAAATATGCAAGGAACCTTGGAGATTTTTTACTTGTTGGCCTTCATACAGACCAAATTATCAGTGCACATAGAGGACCTCATCATCCAATCATGAATCTCCATGAGCGTAGTCTTAGTGTGCTAGCATGCCGATATGTGGATGAAGTTATAATTGGTGCCCCTTGGGAGGTCACCAAAGATATGATTACGACGTTCAATATTTCTTTGGTTGTGCATGGAACTGTTGCTGAGAACAATGACTTATTAAATGGGGATGTTGATCCTTATTCAGCTCCTAAGAGCATGGGGATTTTTAAGATTATAGAGAGCCCGAGAAATATAACAACTACATCAATCATGAAAAGGATAGTTGCGAATCATGAAGCTTTCAAGAAACGGAATGAGAAGAAAATTGAAAGCGAGAGGAGGTATTATGAAGATAAAACCTACGTTGGCAGTGACTGA___CGTTTTTTAGCCCTCATCCTCGTCCATTTACGTTAATGTTTACCTGTTCCACGTGCTGTTGTCTCACTACTGCCCAACCCTATCATACCTTATTGAAAGGTGTTTGGGGGCATGTGTTAACTGGGTCATTTTATTCGGTAACCTTGACGATTTATTTTATCATCCCGGGAAAATCGGAAAGAAATGATCACTAACACAATTTTAGGGCTTTATGTACAATTGCACGAGAGTTTTAACCATTTAAGTTACTGTGTCTTCTATATTTGCTGTATTGATATCTGTATTCAACAATTTTACATGAAGATAGTTGCAAGGATATTTTGTTCATTTATGGAAGGATATCTTACAAAAAGGGTTGTCTAGATTTGGTTTTTGGTCGGAGTTTATAATATAACAGATTGGATGGGTCGGTTTAGTTTACCTTGTACTCGAAGTTCTGAAGGCTGCAATGAAAGAAGACCGTTTGTGCCAACAATCTTCCTCCTTAGATGGCACTTCAAGAGTGGTTTGTTCGCTGTGGTTGTATATGATCTGCCCAGTTCAGGTCAGGTCATATTTTTGATGAGCTATAGCAAGTTGACCGTGTATTTAGTTTCAATCTGGATTGGTATAGACAAGTCATTTCAGTTTTGCTACAAAGACGGCCTTACATTATCTTTGTAGTCTGATAGGTGCAAGGGCCATATGGAGGGCGACACAAAACAGTAACTTATCTGCTTTGTAAAAAGATTTTACTTGACGGAATTTTATGACATTATCTCTAGAGCAAGAGTAACATGTTAACCTGGAAACATT

Fln Alignment:

Contig5586___RKKKVRVYMDGCFDLMHYGHANALRQARALGDELVVGVVSDEEIIANKGPPVLSLEERMVMVSGLKWVDEVIADAPYAINENFMKKLFDEYNIDYIIHGDDPCLLPDGSDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRDRPNSDNHNHSNLQRQFXXXXXXXXXXXXXXXXTRVSHFLPTSRRIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILKYARNLGDFLLVGLHTDQIISAHRGPHHPIMNLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNISLVVHGTVAENNDLLNGDVDPYSAPKSMGIFKIIESPRNITTTSIMKRIVANHEAFKKRNEKKIESERRYYEDKTYVGSD
F6HMQ6_________________KKKPIRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEITANKGPPVTPLNERMIMVSGVKWVDEVIPDAPYAITEDFMKKLFDEYNIDYIIHGDDPCILPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSLSDSHNHSSLQRQFSHGHSQKFEDGGSGSGTRISHFLPTSRRIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILKLARGLGDFLLVGIHTDQTVSANRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAEYNNFPKGKEDPYAIPISLGIYEQLESPLDITTTTIIRRIVSNHEAYQKRNEKKAESEKRYYEDKTFVSGD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1608	83	16			0.994512
1610	83			16	0.994512
1611	83			16	0.994512
1657		33	66		0.997452
1836	75	25			0.996473
1837	25		75		0.996473
1974		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain