SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5535

Length: 407 nt

UniGene Fasta

>biog3_v1.0_unigene5535
AATGTTGTGTATTTAAAAGTAACGAGCCTCTCTTAATTGGACGTGCCTATGGTCGTGTGAGTCGAAATCTTCTTCGTGAAGAGCTGTTAAAGAGGTGTGCTGAAGCTGGAGTGCTATATCTCAATTCCAAAGTTGAGAAGATTACTGAAGCAAACGATGGTCATAGTGTTCTCTTTTGTGAAAATGGAGTGGCAGTTCCCTGCAGGCTTGTTACTGTTGCATCAGGGGCAGCGTCTGGAAAGTTTTTACAATATGAGCTAGATGGTCCACCAGTGGGTGTGCAGACTGCATATGGCATGGAGGTCGAAGTTGAAAACTCTCCTTATGACCCTGAAATAATGGTTTTCATGGATTACCGAGATTACATGAACCAAAATAATACAGAATCTGACTTGAAGTTACCAACA

Ace file of the UniGene biog3_v1.0_unigene5535

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14462	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Lycopene epsilon-cyclase n=2 Tax=Adonis aestivalis var. palaestina RepID=Q9AXK9_9MAGN	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	lycopene epsilon cyclase	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	83%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	GO:0016705	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Lycopene cyclase-type, FAD-binding	IPR008671	-	-
Sma3	Lycopene cyclase, beta/epsilon	IPR010108	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVU1

Fln msg: Distance to subject end: 172 aas, your sequence is shorter than subject: 135 - 512

Fln protein: CCVFKSNEPLLIGRAYGRVSRNLLREELLKRCAEAGVLYLNSKVEKITEANDGHSVLFCENGVAVPCRLVTVASGAASGKFLQYELDGPPVGVQTAYGMEVEVENSPYDPEIMVFMDYRDYMNQNNTESDLKLPT

Protein Length: 136

Fln nts: AATGTTGTGTATTTAAAAGTAACGAGCCTCTCTTAATTGGACGTGCCTATGGTCGTGTGAGTCGAAATCTTCTTCGTGAAGAGCTGTTAAAGAGGTGTGCTGAAGCTGGAGTGCTATATCTCAATTCCAAAGTTGAGAAGATTACTGAAGCAAACGATGGTCATAGTGTTCTCTTTTGTGAAAATGGAGTGGCAGTTCCCTGCAGGCTTGTTACTGTTGCATCAGGGGCAGCGTCTGGAAAGTTTTTACAATATGAGCTAGATGGTCCACCAGTGGGTGTGCAGACTGCATATGGCATGGAGGTCGAAGTTGAAAACTCTCCTTATGACCCTGAAATAATGGTTTTCATGGATTACCGAGATTACATGAACCAAAATAATACAGAATCTGACTTGAAGTTACCAACA

Fln Alignment:

Contig5535___KSNEPLLIGRAYGRVSRNLLREELLKRCAEAGVLYLNSKVEKITEANDGHSVLFCENGVAVPCRLVTVASGAASGKFLQYELDGPPVGVQTAYGMEVEVENSPYDPEIMVFMDYRDYMNQNNTESDLKLPT
A9NVU1_________________KNNKPLLIGRAYGRVSRILLREELLKRCAEAGVLYLNSKVEKITEASDGHSVLSCENGVAIPCRLVTVASGAASGKFLQYELDGPPVGVQTAYGMEVEVENSPYDPEIMVFMDYRDYMNQNNTESDLKLPT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain