SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5527

Length: 1220 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5527 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16884	66/66

Source	Descriptions	Term	Type	Identity
AutoFact	24 kDa seed maturation protein n=1 Tax=Elaeis guineensis RepID=B3TLN1_ELAGV	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	24 kda seed maturation protein	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reticulon	IPR003388	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ37

Fln msg:

Fln protein: MADHQHSDESLMDKISEKLHKRSTSSSSSSDDEKPPVSHQPIKPVNRPVGGKKSVHKCLGGRKAADLFLWRDKKRSASILAAATVLWILFECMEYHFLTFVCHVLILSLAILFIWINSAAFLKRSPPHIPEIAIPEDAVHNLASELRFEVNRVFAVLHEVATGRDLKKYLLVVASLWFLSVIGSWCDFLSLAYIVLVVAHTVPFLYEKYQDQIDSFAHKVSLKAKEQYKVIDSKILKKIPRGPAKDKKHL*

Protein Length: 252

Fln nts: AATGTCTGCTTAAGCTAGTTGGTATCAACGCAGAGTACGCGGGATTTCACCAAGACTTAGTGCTTAAGAAAGAGCAGATATTAAATTGGGAATAAGCTCGTTCTCTCTTGAGAAGAAAGGCGGTTTGCGGTTTGATTTGATTTTGGAAGTCGCAGAAAACGAGCTACAGAG_-_ATGGCAGATCACCAGCATTCTGACGAGTCCCTTATGGACAAGATTTCTGAGAAATTGCATAAGCGTTCAACATCGTCTTCTTCGTCCTCAGATGACGAAAAACCCCCTGTTTCTCATCAGCCCATTAAACCCGTTAACAGACCTGTTGGAGGGAAGAAATCTGTGCATAAGTGTCTGGGTGGAAGAAAAGCCGCGGATTTGTTCTTGTGGAGGGATAAGAAAAGGTCTGCGAGCATTCTTGCTGCGGCCACTGTATTGTGGATCCTATTTGAATGCATGGAATATCACTTCTTGACATTTGTATGCCATGTGCTTATTCTCTCCTTGGCGATCTTGTTCATCTGGATCAATTCAGCCGCTTTCTTAAAGAGGTCCCCACCACATATACCAGAGATTGCGATTCCAGAGGATGCAGTTCACAATCTTGCCTCTGAACTTAGATTTGAAGTCAACAGAGTTTTTGCTGTTTTACATGAGGTTGCAACTGGTAGAGACTTGAAGAAATATCTATTGGTAGTTGCAAGTCTCTGGTTTCTCTCTGTTATTGGAAGCTGGTGTGATTTCCTGTCTCTCGCCTACATAGTGCTTGTTGTTGCACATACTGTTCCGTTTCTGTACGAGAAATATCAAGATCAGATCGATTCTTTTGCTCACAAAGTATCTCTGAAAGCCAAGGAGCAGTACAAAGTTATTGATTCTAAAATTTTAAAGAAGATCCCAAGGGGTCCGGCCAAAGATAAAAAACATTTGTAG___GGAGCGTCCTCTCTATGAGGCAAATTGTAGAGTAGTTTTTGAATTGTTAGATATCATGTTTTTTGGAGCCTTATTGCCGTGGTGATTGGTATCTGCCATGGTAATGCTCGGCTGGAATGAGTACAATTATGGTTTGTTATCTGGGTGCTAGTGCCCCAGAATTGAATCTCATTGTCCTGTTTATTCTGTATTTATTAGTTCTTATGTAATCATATCAGTCGCAGGCATTTTCTTAGATCTTAAAAGGTCTGTAATTATGTGATGTTTATGAATTAAGTATGAAATCCCTTTACATT

Fln Alignment:

Contig5527___MADHQHSDESLMDKISEKLHKRXXXXXXXSDDEKPPVSHQPIKPVNRPVGGKKSVHKCLGGRKAADLFLWRDKKRSASILAAATVLWILFECMEYHFLTFVCHVLILSLAILFIWINSAAFLKRSPPHIPEIAIPEDAVHNLASELRFEVNRVFAVLHEVATGRDLKKYLLVVASLWFLSVIGSWCDFLSLAYIVLVVAHTVPFLYEKYQDQIDSFAHKVSLKAKEQYKVIDSKILKKIPRGPAKDKKHL
A9NQ37_________________MADNQHSEESIMDKISEKLHHRSSSSSSSSDDEKPPVSHH--QPVNRPSGGKKSVHKCLGGSKAADLILWRDKQRSASILAGATVLWILFKCMEYHFLTFVCHVLILSLAILFIWINSAAFLKRSPPHIPEIAISEVAIHNVASELRVEVNRAFSVLHEVATGRDFKKYLLVVAGLWFLSVIGSWCDFLTLAYIVLVVTHTVPVLYEKYQDQVDSFAHKATVKAKDQYKVIDAKILKKIPRGPLKDKKHL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
43	33			66	0.997452
45	66		33		0.997452
46	25	50		25	0.995533
48			75	25	0.996473
49	75		25		0.996473
50		75		25	0.996473
164	83		16		0.994512
165		83		16	0.994512
166		83		16	0.994512
207	50		50		1.0
242	20		80		0.995493
245	80		20		0.995493
316		33		66	0.997452
317		33		66	0.997452
318		33	66		0.997452
319			66	33	0.997452
347	25			75	0.996473
349			25	75	0.996473
369	12	87			0.992554
420	11	88			0.923564
421	11			88	0.923564
441	90		10		0.90298
442		90		10	0.90298
627		11	88		0.923564
717	80			20	0.995493
718			80	20	0.995493
775	25		75		0.996473
789	33			66	0.997452
790	33	66			0.997452
791		66		33	0.997452
792	66		33		0.997452
793		66		33	0.997452
1066		16		83	0.999991
1151	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain