SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5524

Length: 969 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5524 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18094	3/32
SustainPine v2.0	sp_v2.0_unigene24952	1/32
SustainPine v2.0	sp_v2.0_unigene26497	25/32
SustainPine v2.0	sp_v2.0_unigene81726	1/32

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	41%
Blast2go	dek domain-containing chromatin associated protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor, NFYB/HAP3, conserved site	IPR003956	-	-
Sma3	Transcription factor, CBFA/NFYB, DNA topoisomerase	IPR003957	-	-
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	DEK, C-terminal	IPR014876	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: F6I550

Fln msg: Distance to subject end: 338 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 251 - 599

Fln protein: KLRTPTEMAEVGVESAVPESSANGKVEVPTEVQEEAVTESQPFKGNGTETERVLEEASEPEGETNAKAVKEDAVKGAEDNGNDEDMSAGDGGEEKIKADEKSEGKVPKKRGRGRVSTDAKKSKAVEDERESKQGQEETPKESKKRKIRELSTPTLDRPSRERKTIERFVASNEKENVKEFTIEKGRGTLLKDIPNVVYKLSKRSRADENVRLLHAVLYGKRGKAFHLKNNILQFSGYVWGDNEEKLKGKDI

Protein Length: 252

Fln nts: GGAAATTCACACCGTCAAGGAGTGCAGGGTTACGCCGAGCGGGCGTTTCTGGATAGTTGAGATCGTGACCTTAAATTGAGCGAGCTGGACTGCGCGATAGCCTTACTCGGACCGCGGAGAGTGTTCAAAGGATAGTCTTTTCGACGGGAAAGGCCCAGGTTCAGCACTCCTGCCTTGATATTTGGGGTTCCTGAAGAGCTTGATTCTAGAGGCTAGAAGCTTCGAACACCAACGGAGATGGCTGAGGTGGGCGTAGAGTCTGCCGTTCCAGAATCGTCTGCTAACGGGAAGGTTGAAGTACCCACGGAGGTGCAGGAGGAAGCTGTGACGGAATCACAACCATTTAAGGGCAATGGAACTGAAACTGAAAGAGTTCTAGAAGAAGCTAGCGAGCCAGAAGGAGAGACGAATGCGAAAGCTGTGAAAGAAGATGCTGTTAAGGGAGCGGAAGATAACGGGAATGACGAAGATATGAGTGCTGGGGATGGTGGCGAAGAGAAAATAAAGGCAGATGAAAAGAGCGAAGGAAAGGTGCCGAAGAAAAGAGGTAGGGGACGTGTTTCAACCGATGCGAAGAAATCTAAAGCTGTTGAAGATGAAAGAGAGAGTAAACAAGGACAAGAAGAAACACCAAAAGAATCAAAGAAGCGGAAAATCAGGGAGCTTTCTACTCCTACTCTCGATCGTCCCTCCAGGGAAAGAAAGACGATCGAGCGCTTCGTTGCGTCGAACGAAAAGGAAAACGTTAAAGAGTTCACCATTGAAAAGGGCAGAGGGACGCTGCTTAAAGACATCCCAAATGTGGTATACAAACTATCCAAAAGGAGTAGAGCTGATGAAAATGTGAGACTTCTTCATGCGGTTCTTTATGGGAAGCGTGGAAAAGCTTTTCATTTAAAAAATAACATCTTGCAGTTTTCAGGTTACGTGTGGGGTGACAATGAGGAAAAGCTTAAGGGGAAAGACATT

Fln Alignment:

Contig5524___VPEELDSRG*KLRTPTEMAEVGVESAVPESSANGKVEVPTEVQEEAVTESQPFKGNGTETERVLEEASEPEGET----NAKAVKEDAVKGAEDNGNDEDMSAGDGGEEKIKADEKSEGKVPKKRGRGRVSTDAKKSKAVEDERESKQGQEETPKESKKRKIRELSTP---TLDRPSRERKTIERFVASNEKENVKEFTIEKGRGTLLKDIPNVVYKLSKRSRADENVRLLHAVLYGKRGKAFHLKNNILQFSGYVWGDNEEKLKGK
F6I550_________________LPEKMES----VMEKKEEENNGVKEMEEDSKGDEKVETEA-LEAEKMDEDLAAKEEKENKE--LEEKEEPKTEVMEEDNVSKENEASEEKVESKENVEEKV--DGSKEKEKGGEIKDGKGPRKRGKGRSSGERVKDKV---------------KEVEEKKVKEPRTPAASTIARPVRERKSVERLVASIERDSTKEFHIEKGRGTALKDIPNVAYKLSKR-KSDDTFKLLHTILFGRRGKAFQVKNNISRFSGFVWHENEEKQKIK

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
152	14		85		0.993533
155	85			14	0.993533
253	16		83		0.994512
254		83		16	0.994512
305	83			16	0.994512
326	14			85	0.993533
327	14			85	0.993533
369	16			83	0.994512
370	16			83	0.994512
372		83	16		0.994512
373	83			16	0.994512
418	20	80			0.995493
419	20	80			0.995493
421	80		20		0.995493
422		80		20	0.995493
431	14			85	0.993533
432	14			85	0.993533
433		85		14	0.993533
435			85	14	0.993533
480	11	88			0.923564
482		88	11		0.923564
483		88		11	0.923564
585	10	90			0.90298
586	11			88	0.923564
588		87	12		0.992554
635	12		87		0.992554
638			12	87	0.992554
639		87		12	0.992554
647	11		88		0.923564
648		88		11	0.923564
649			11	88	0.923564
804	11			88	0.923564
805		11	88		0.923564
806	11	88			0.923564
832	83			16	0.994512
834	83			16	0.994512
859		33		66	1.0
874	14	28		57	1.0
875		14	85		0.993533
876	14	85			0.993533
877			85	14	0.993533
878		85		14	0.993533
918	20	80			0.995493
921			40	60	1.0
922	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain