SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5519

Length: 1083 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5519 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23293	1/72
SustainPine v2.0	sp_v2.0_unigene24793	71/72

Source	Descriptions	Term	Type	Identity
AutoFact	putative 60S ribosomal protein L9 [Oryza sativa Japonica Group] gb\|EEC72297.1\| hypothetical protein OsI_05474 [Oryza sativa Indica Group] gb\|EEE56134.1\| hypothetical protein OsJ_05010 [Oryza sativa Japonica Group]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	60s ribosomal protein l9	-	-	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L6	IPR000702	-	0.0	-
Sma3	Ribosomal protein L6, conserved site-2	IPR002359	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
331	20		80		0.995493
332	20	80			0.995493
334	80			20	0.995493
352	14	85			0.993533
354		85		14	0.993533
410	11	88			0.923564
432	12			87	0.992554
433		87		12	0.992554
449	14	85			0.993533
453		85		14	0.993533
518		20	80		0.995493
521	80			20	0.995493
529	33			66	0.997452
658	20	80			0.995493
670	83			16	0.994512
708	25			75	0.996473
709		75		25	0.996473
710			25	75	0.996473
807	20		80		0.995493
808		80		20	0.995493
821		80		20	0.995493
853			88	11	0.923564
899	33			66	1.0
915	10		90		0.90298
917	10	90			0.90298
918		90		10	0.90298
935		88	11		0.923564
995	10		90		0.90298
1009	11	88			0.923564
1010	88		11		0.923564
1016		88	11		0.923564
1026	88	11			0.923564
1032	88	11			0.923564
1033	11			88	0.923564
1036	11		88		0.923564
1039		11	88		0.923564
1044		85	14		0.993533
1052	66	33			0.997452
1053	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain