SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5518

Length: 480 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene5518
TTATAAGCTTCGATTAGCAATTGCATCATCAACCAATGCAGCCATTCAGGTTCGATTCAATGATGCAAATATATATAAACCACATTTTGATACCATGCAATTTGGGAAAGATAATGCCATTGCTCGTCATGGCAACCACGGTTTGTACCATCTGTTTAACATTGATGTTTCTGGAAACTGGTTGGTGGAGGGTGAGAACACATTATACCTTACACAAAGAAAGCCACTGGACCCTTTTACTGGGGTAATGTATGATTATCTCCGGTTGGAGAAAGTTTCTTCATAGACTAGAAGAAGAACAATTGAGTTTTCATATATTAAGAGAGAATTATTGTATATGATTTAATAATGAATTCGTATAAACATAGTTTACATTGTTTAAATTATTTGTTTAGGATTACACAATGAATTCCTATAAACATCGTTTTCACAATTTCTCGGTGGAGCGCACAAACAAATATTGTGAAGATTATTTTTCCA

Ace file of the UniGene biog3_v1.0_unigene5518 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14416	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb\|AEE28513.1\| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR004348	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNQ0

Fln msg: your sequence is shorter than subject: 95 - 222

Fln protein: YKLRLAIASSTNAAIQVRFNDANIYKPHFDTMQFGKDNAIARHGNHGLYHLFNIDVSGNWLVEGENTLYLTQRKPLDPFTGVMYDYLRLEKVSS*

Protein Length: 96

Fln nts: TTATAAGCTTCGATTAGCAATTGCATCATCAACCAATGCAGCCATTCAGGTTCGATTCAATGATGCAAATATATATAAACCACATTTTGATACCATGCAATTTGGGAAAGATAATGCCATTGCTCGTCATGGCAACCACGGTTTGTACCATCTGTTTAACATTGATGTTTCTGGAAACTGGTTGGTGGAGGGTGAGAACACATTATACCTTACACAAAGAAAGCCACTGGACCCTTTTACTGGGGTAATGTATGATTATCTCCGGTTGGAGAAAGTTTCTTCATAG___ACTAGAAGAAGAACAATTGAGTTTTCATATATTAAGAGAGAATTATTGTATATGATTTAATAATGAATTCGTATAAACATAGTTTACATTGTTTAAATTATTTGTTTAGGATTACACAATGAATTCCTATAAACATCGTTTTCACAATTTCTCGGTGGAGCGCACAAACAAATATTGTGAAGATTATTTTTCCA

Fln Alignment:

Contig5518___YKLRLAIASSTNAAIQVRFNDANIYKPHFDTMQFGKDNAIARHGNHGLYHLFNIDVSGNWLVEGENTLYLTQRKPLDPFTGVMYDYLRLEKVSS
A9NNQ0_________________YKLRLAIASSTNAAIQIRFNDENIYKPHFDTMQFGKDNAIARHGIHGLYHLFNIDVSGNWLVEGENTLYLTQRKVTSPFTGVMYDYLRLEKVSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain