SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5416

Length: 511 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene5416
AATTGGATTACTATTAGCAGCTTTAGGCTTTGGCAATAGGACTCGACTTTACCTTGCTTCTCACAAGGTATATGAGGGGAAGTCAAGAATTTCAATACTGCGGCAGTTGTTTCCTTTAATGGAAGATAAGAAGAGTCTTGCAACAGAAGAGCAACTGAAACAACTTGAAGGGAAAGCTTCTATTTCGGCTGCTGTGGATTATCACGTCAGTATGCAGAGTGATATCTTCATTTCAGCATCACCTGGCAACATGCACAATGCTTTGGCAGGGCACCGTGCCTATAACTATCATAAGAAAACAATTCGTCCACACATGACCTCACTGGGGCAGCTGTTCCTGAACAGAAGTATTGACTGGTCGGACTTTCAACATAAGGTTAGAACTGGTCATAAGCAGAGACAAGGGCAACTCAGGTTACGAAAAGAAAAGCAGTCAATATATACATATCCTGCTCCAGATTGCATGTGCCAACTATTGAACGATTGCTTTGGAAAGCAATTACGCAGAATG

Ace file of the UniGene biog3_v1.0_unigene5416 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1516	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	O-fucosyltransferase family protein [Arabidopsis thaliana] gb\|AAP68214.1\| At4g24530 [Arabidopsis thaliana] dbj\|BAE99793.1\| PsRT17-1 like protein [Arabidopsis thaliana] gb\|AEE84921.1\| O-fucosyltransferase family protein [Arabidopsis thaliana]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	duf246 domain-containing protein at1g04910-like	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	SKP1 component	IPR001232	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3		IPR004348	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	SKP1 component, dimerisation	IPR016072	-	-
Sma3	SKP1 component, POZ	IPR016073	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ81

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 170 - 634

Fln protein: IGLLLAALGFGNRTRLYLASHKVYEGKSRISILRQLFPLMEDKKSLATEEQLKQLEGKASISAAVDYHVSMQSDIFISASPGNMHNALAGHRAYNYHKKTIRPHMTSLGQLFLNRSIDWSDFQHKVRTGHKQRQGQLRLRKEKQSIYTYPAPDCMCQLLNDCFGKQLRRM

Protein Length: 171

Fln nts: AATTGGATTACTATTAGCAGCTTTAGGCTTTGGCAATAGGACTCGACTTTACCTTGCTTCTCACAAGGTATATGAGGGGAAGTCAAGAATTTCAATACTGCGGCAGTTGTTTCCTTTAATGGAAGATAAGAAGAGTCTTGCAACAGAAGAGCAACTGAAACAACTTGAAGGGAAAGCTTCTATTTCGGCTGCTGTGGATTATCACGTCAGTATGCAGAGTGATATCTTCATTTCAGCATCACCTGGCAACATGCACAATGCTTTGGCAGGGCACCGTGCCTATAACTATCATAAGAAAACAATTCGTCCACACATGACCTCACTGGGGCAGCTGTTCCTGAACAGAAGTATTGACTGGTCGGACTTTCAACATAAGGTTAGAACTGGTCATAAGCAGAGACAAGGGCAACTCAGGTTACGAAAAGAAAAGCAGTCAATATATACATATCCTGCTCCAGATTGCATGTGCCAACTATTGAACGATTGCTTTGGAAAGCAATTACGCAGAATG

Fln Alignment:

Contig5416___LLLAALGFGNRTRLYLASHKVYEGKSRISILRQLFPLMEDKKSLATEEQLKQLEGKASISAAVDYHVSMQSDIFISASPGNMHNALAGHRAYNYHKKTIRPHMTSLGQLFLNR---SIDWSDFQHKVRTGHKQRQGQLRLRKE------KQSIYTYPAPDCMCQ
B8LQ81_________________LLLKALGYLPTTNIYIAAGEIY-GNGSMRALQNEFPNVFSHSTLATEEELEPFKNYQNRLAALDYILALESDVFLYTYDGNMAKAVQGHRRFEGFRKTINPDRENLIKLIDEMDQGQISWNSFASKVKATHSNRVGAPYLREAGDFPRLEENFYANPFPGCICE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain