SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5373

Length: 1176 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5373 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21441	115/115

Source	Descriptions	Term	Type	Identity
AutoFact	Rubber elongation factor n=1 Tax=Morus alba RepID=C9E7B4_MORAL	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	rubber elongation factor	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rubber elongation factor	IPR008802	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNP5

Fln msg:

Fln protein: MAVEDTEVETKQVQEEARLKYLGIFQIAVLRATVFLSNLYDYAKENAGPLKPGVDTVEQTVKTVVGPVYLKFDGKPLQLLHFLDRKVDDTIGKVNEFVPPTVKHRTCEVYDMAKQAPDVARSVISEIQRSGIIETANGTARSLYTKYEPTAKDLYAKHEPAAQKWALFAYHKLLQLPLFPQLVHILIPTATYWTDKYNHTVVYLAERHYRVADFLPSVPVEKIRKALERGLEETKHAEIHTAS*

Protein Length: 245

Fln nts: CAAGCTCAAAGGGATTTCTGTGTTCTTTATTTTGTTGCAATATCTCAACGTTTTCGTTGACAGTCGCAAGAAGTAGATCTGACTGTAAGGTTTGACCTAGTTCTCTGAAATTTATCATACAATAGGGTTTGTGTGCGCTCCTCCGATCAATAAACA_-_ATGGCAGTGGAAGATACAGAGGTAGAGACGAAGCAGGTTCAAGAGGAGGCGAGGCTCAAATATTTGGGCATTTTCCAAATTGCCGTGTTGAGGGCAACCGTTTTCCTTTCTAATTTATACGATTATGCCAAGGAGAACGCAGGACCTCTGAAGCCCGGCGTCGATACAGTGGAGCAGACCGTGAAGACCGTGGTTGGCCCTGTGTATCTCAAATTTGATGGAAAACCCCTTCAGCTTCTTCATTTCCTTGATCGAAAGGTTGATGACACAATTGGCAAAGTAAATGAATTTGTGCCACCAACAGTGAAGCACAGAACATGCGAGGTATATGATATGGCAAAACAAGCACCTGATGTTGCGAGATCTGTCATAAGTGAAATACAAAGGAGCGGTATAATTGAAACTGCAAATGGAACAGCAAGGAGCTTGTATACCAAGTATGAGCCAACTGCCAAGGATCTTTACGCCAAACATGAACCTGCTGCACAAAAATGGGCGCTGTTTGCTTATCACAAATTGCTTCAGCTTCCCTTGTTTCCCCAGCTGGTTCATATCCTAATTCCAACTGCTACATATTGGACGGATAAATATAATCATACTGTTGTTTATCTTGCTGAAAGGCATTATCGCGTTGCAGATTTTCTCCCGTCGGTTCCTGTTGAGAAAATCAGGAAAGCCTTAGAAAGGGGCTTGGAAGAAACTAAGCACGCTGAAATTCATACTGCTTCCTGA___TTCCAGATGACATAGGTGGTGTTCAGGAGATCTGTGGGGTTTGTGATGGAACGAGATGGTACACTTCTGGCATGAATATTTGTGCAATAAATAATATATCCATAGTCATGTTTATTGTTTTGCGGTAGCTTAGATTAGTCTGGCAGAGTCTCTTTTGCTTGACTAATGATGTAGCTGTATATTCTTCCATAGATACTTCTGGAACTTCTATGGAATCATCCTACACGATGAGCTACTTGTGGCTTGTATGAACATATTTATTCGGTTGGAAATTGGTTTTTCTACATT

Fln Alignment:

Contig5373___MAVEDTEVETKQVQEEARLKYLGIFQIAVLRATVFLSNLYDYAKENAGPLKPGVDTVEQTVKTVVGPVYLKFDGKPLQLLHFLDRKVDDTIGKVNEFVPPTVKHRTCEVYDMAKQAPDVARSVISEIQRSGIIETANGTARSLYTKYEPTAKDLYAKHEPAAQKWALFAYHKLLQLPLFPQLVHILIPTATYWTDKYNHTVVYLAERHYRVADFLPSVPVEKIRKALERGLEETKHAEIHTAS
A9NNP5_________________MAVEEAEVETKQVQEEAKLKYLGFFQIAVLRAAVCLSSLYKYAKENAGPLKPGVDTVEQTVKTVVSPVYLKFDGKHLELLHFLDRKVDDTIGKVDEFVPPILKQRTCEVYDMAKQVPDVARSVISEIHRSGIIETASETARSLYTK---SVKDLYTKHEPVAQEWGLFAYHKLLQLPLLPQLVHILIPTATYWTDKYNHTVVYLADRHYRLADFLPLVPVERIRKLLERDLEETKKAEIHTAS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
275	14			85	0.993533
420		86		13	0.999973
450	14			85	0.999981
453		85		14	0.999981
774			81	18	0.999994
776	90			10	0.90298
915			88	11	0.923564
917	88			11	0.923564
1171		50	50		1.0
1172	75	25			0.996473
1173		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain