SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5361

Length: 608 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5361 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8966	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	guanylate kinase [Arabidopsis thaliana] gb\|AAK55680.1\|AF378877_1 AT3g06200/F28L1_14 [Arabidopsis thaliana] gb\|AAL38595.1\|AF446862_1 AT3g06200/F28L1_14 [Arabidopsis thaliana] gb\|AEE74360.1\| guanylate kinase [Arabidopsis thaliana]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	guanylate kinase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Guanylate kinase.	EC:2.7.4.8	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	purine nucleotide metabolic process	GO:0006163	Biological Process	84%
Blast2go	phosphorylation	GO:0016310	Biological Process	84%
Blast2go	guanylate kinase activity	GO:0004385	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Guanylate kinase	IPR008144	-	-
Sma3	Guanylate kinase/L-type calcium channel	IPR008145	-	-
Sma3	Guanylate kinase, sub-group	IPR017665	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
22		66	33		0.997452
23	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain