SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5302

Length: 1317 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5302 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene444	27/28

Source	Descriptions	Term	Type	Identity
AutoFact	sorting nexin 1 [Brassica oleracea]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	sorting nexin 1	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	positive gravitropism	GO:0009958	Biological Process	84%
Blast2go	root development	GO:0048364	Biological Process	84%
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	84%
Blast2go	endosome to lysosome transport	GO:0008333	Biological Process	84%
Blast2go	Golgi to vacuole transport	GO:0006896	Biological Process	84%
Blast2go	auxin homeostasis	GO:0010252	Biological Process	84%
Blast2go	cell communication	GO:0007154	Biological Process	84%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	84%
Blast2go	retromer complex	GO:0030904	Cellular Component	84%
Blast2go	multivesicular body	GO:0005771	Cellular Component	84%
Blast2go	microsome	GO:0005792	Cellular Component	84%
Blast2go	intracellular signal transduction	GO:0035556	Biological Process	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phox homologous domain	IPR001683	-	0.0	-
Sma3	Vps5 C-terminal	IPR015404	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXN5

Fln msg: Overlapping hits, possible frame ERROR between 92 and 92, your sequence is shorter than subject: 329 - 408

Fln protein: CIPPLPEKSAVEKFRFSAEFIELRRRGLDxxINRIASHSQLQHSEDLKHFLQAEEEAMERVRSLETSIFGKKPSDFMQIFKDVQSKVSDVVLGKEKPIEESDPEYEKLKHYIFELEDHLAEAQKQAFRLVKRHRELGQSLVDFGKAVKLLGTCEGGSLGKAFSELGSQSELLSFKLQKEAQDLLMNFEEPLKDYVRTVQSIKATMADRAQVFRQQCELTEAAKLKEINVERLKATRQEHKVPEAEADYREVKAQSEEATKQLETIIGLMNDEILRFQEEKTLDLGFVFHEFAKGQAQLANDIADAWRSLLPKLESCSQNAITDVDSSI*

Protein Length: 330

Fln nts: AATGTATTCCACCTCTTCCAGAGAAAAGTGCTGTAGAGAAGTTTCGCTTCAGTGCGGAGTTTATTGAGCTGAGGCGTCGAGGATTGGATxxxxxxATAAATCGAATTGCTTCTCATTCACAACTGCAACATAGTGAAGATTTGAAGCATTTCTTACAGGCGGAAGAAGAGGCAATGGAGCGAGTAAGATCTTTGGAAACCAGCATCTTTGGAAAGAAACCTAGTGACTTTATGCAAATATTTAAGGATGTACAGTCCAAGGTAAGTGATGTTGTGCTTGGCAAAGAAAAGCCAATTGAGGAGTCTGATCCTGAATATGAGAAGCTTAAACATTACATTTTTGAATTGGAAGATCATTTGGCAGAGGCCCAAAAACAAGCATTTCGCCTAGTGAAGAGGCACAGAGAGTTGGGGCAGTCCTTGGTTGACTTTGGTAAGGCAGTCAAGCTACTTGGTACTTGTGAAGGAGGTTCTCTTGGAAAAGCATTTTCAGAGCTTGGGTCCCAGTCTGAATTGCTTTCATTCAAACTTCAGAAAGAGGCGCAAGATCTTTTAATGAACTTTGAAGAACCCCTAAAGGACTATGTGCGTACAGTCCAGTCAATTAAGGCAACTATGGCAGATAGAGCCCAAGTTTTTAGGCAGCAATGTGAATTGACAGAGGCAGCCAAGTTGAAGGAAATCAATGTGGAACGTTTGAAAGCAACACGGCAGGAACACAAAGTGCCAGAAGCAGAAGCAGATTATAGAGAAGTTAAAGCTCAGAGTGAGGAAGCAACTAAACAGTTAGAGACAATCATAGGATTAATGAATGATGAAATCTTACGCTTCCAGGAAGAGAAAACACTTGATTTAGGTTTTGTGTTTCATGAATTCGCAAAAGGGCAGGCACAGCTTGCAAATGATATTGCAGATGCTTGGCGTAGCCTTCTTCCTAAATTGGAAAGTTGCTCTCAGAATGCCATAACAGATGTAGATTCTTCCATATAACAGTTGCACAATTAGATGACGTGTTTGGACAAAACGATTTTGTATTGTGTAGCACAAAGTCATCTTTGTAAATAATGCATTTGATTGATTCATTGCATTTGATTTAAATGCGAGTCCAGTGCTGATTCACACACTAGGTGTTTTCCATATCAGATACTGCACATTTTGATCAGTGCGTTTTCCATCAAATGTTATGTTTGAGGGTTTGTTGACCATCCCGTCTCAAGGTTCTATCATCAGTAATTAAATTTCAATAGCATTTTGAGCTGTTCAATATAGAAGTGATAGTTGAGGAATTGTATCCACAATGACTCCCGACCATGTAATTC

Fln Alignment:

Contig5302___IPPLPEKSAVEKFRFSAEFIELRRRGLDVFINRIASHSQLQHSEDLKHFLQAEEEAMERVRSLETSIFGKKPSDFMQIFKDVQSKVSDVVLGKEKPIEESDPEYEKLKHYIFELEDHLAEAQKQAFRLVKRHRELGQSLVDFGKAVKLLGTCEGGSLGKAFSELGSQSELLSFKLQKEAQDLLMNFEEPLKDYVRTVQSIKATMADRAQVFRQQCELTEAAKLKEINVERLKATRQEHKVPEAEADYREVKAQSEEATKQLETIIGLMNDEILRFQEEKTLDLGFVFHEFAKGQAQLANDIADAWRSLLPKLESCSQNAITDVDSSI
A9NXN5_________________IPPLPEKNAVEKFRFSAEFIELRRRGLDVFINRIASHPQLQHSEDLKHFLQAEEEAMERVRSLETSIFGKKPSEFMQIFKDVQSKVSDVVLGKEKPIEESDPEYEKLKHYIFELEDHLAEAQKQAFRLVKRHRELGQSLVDFGKAVKLLGTCEGGSLGKAFSELGSQSELLSFKLQKEAQDLLMNFEEPLKDYVRTVQSIKATMADRAQAFRQQCELTESAKLKEINVERLKATRQEHKVPEAEADYREVKVQSEEATKQLQTIIEFMNEEIIRFQEEKTLDLGSVFHEFAKGQAQLANDIAEAWRTLLPKLESCSQNAIANVDSSI

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
424		80		20	0.995493
482	14	85			0.993533
483		14		85	0.993533
484	14	85			0.993533
632	11	88			0.923564
634		88		11	0.923564
635	88		11		0.923564
727	12	87			0.992554
749	14		85		0.993533
750		14	85		0.993533
751	14		85		0.993533
762	12			87	0.992554
763	12			87	0.992554
764		87		12	0.992554
765	87		12		0.992554
883	12	87			0.992554
910	14	85			0.993533
939	80	20			0.995493
942			80	20	0.995493
1150	16	83			0.994512
1152	16			83	0.994512
1153		83		16	0.994512
1178		83		16	0.994512
1200	16			83	0.994512
1201		16	83		0.994512
1203			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain