SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5297

Length: 1945 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene5297
AGGACGCTGGTCCCATGGCTCACCCTGTGCGTCCACATTCATATATCAAGATGGACAATTTCTATACTGTAACGGTGTATGAGAAGGGAGCAGAAGTTGTCAGGATGTACAAGACCATGTTAGGGCAATCAGGGTTTCGTAAGGGAATGGATCTTTATTTTCAAAGACATGATGGGCAAGCAGTAACTTGTGAAGATTTCTTTGCTGCTATGCGTGATGCCAATAATGCAGATCTTTCAAATTTCTTGTTATGGTATTCACAAGCGGGAACCCCTGTTCTAAAAATGCAATCATCCTACAACTCTGAGGGAAATACTTATACACTTAAGTTCAGGCAAGAAATTCCTCCTACTCCAGGTCAATCAGTGAAAGAACCGATGTTTATACCTGTGGCCGTTGGGTTGCTGGATTCCAACGGAAAGGATCTGCCTCTTTCATCAGTCTATAATCGAGGATCTCTGCAGTCCTTTACTAGTGAAGGTCATTCCGTTTCAACAGTAATCCTCCGTATTGAAAAGGAGGAAGAAGAGTTTGTCTTTGTTGACATTCCTGAAAGACCAATTCCCTCTCTACTACGCAATTATAGTGCTCCTGTGCGTCTTGTTTCAGATATCACTGATGATGATTTGTACTTTCTACTTGCACATGATTCAGATGAGTTTAACCGGTGGGAGGCTGGCCAGACATTGGCAAGAAAACTCATGCTTTCTCTCGTAGATAAGGCACAACAGAATCAACCCTTGAGTGTGGACCCAAAATTTGTCAACGGACTAAGAAGTATTCTTTGTGATTCGAGTTTGGACAAAGAGTTCATAGCAAAGGCAATCACTCTACCTGGAGAGGGAGAAATCATGGACCTCATGGAAGTTGCAGATCCAGATGCTGTTCACGGAGTTCGTCGTTTTGTTAGAAAACAACTTGCGTCTGAATTGCGTGCAGAGTTTTGCAGAGCTGTTGAAACTAACCGAAGCTCAGAGGAATATGATCCTAATCACGAGAGCATGGCAAGACGTGCTTTGAAAAATACGGCCCTTGCTTACCTTGCCTCATTGAATGAGCCAGAAATGACAGAGCTTGTATTACATGAGTACAAATCAGCTACAAATATGACTGAACAATTTGCAGCTTTGGGTGCTATTGCCCAAAATGCCGGAGATGTACGAGATGAAGTTTTGTCTGATTTCTATCAGAAGTGGAAAGAAGATGCCTTGGTGATCAATAAGTGGCTTGCATTGCAAGCTGTCTCTGATATCCCGGGCAATGTTAAGAATGTACAAAGCTTGTTGGAGCACCCTGCTTTTGACATTCGGAATCCTAACAAGGTTTATTCTGTCATTGGAGGGTTCTGCAGCAGTAAGGTTAACTTCCATGCAAAAGATGGTTCTGGTTATGAATTCGTTGGAGATATGGTATTGAAGATAGATAAAATTAATCCACAGGTTGCATCCCGCACCATTTCAGCTTTCTCAAGGTGGAAGCGATTTGATGAGGGCAGACAAACTCTTGCAAAGGCTCAACTAGAGCGTATTCTATCATCCAATGGGTTGTCAGAAAACGTGTATGAGATTGCCTTGAAAAGTTTGGCTGCCTAGTTGCGTAGGATACGGTTCTCTCACTTGCAAGCTATGATACTTGAAGGGTTAACTCAAGACCTTAAGAATGGTATAATCTACACGTTGCGTGTTGAATGATGAGATGCGGAGGCTGCGGTTACAACAAATCTTCGATGCTTGTTAATGAATGGTCATGGGTTAAATCTCGCCCTTTACAACTGTTCTTGTGCATGTATCCTGTCTTTTTGAGTACATTAAAAAAACAGTCGTTTATAGCAATCGATATAACGATCACAACAGTAGTCAACAATGGAATTGGATGTAATTATCGCATGTGAACTAGAAGACTAGCTGTATTAATTAATGTTGAGTGGATGTGCAGATCTGTAAAT

Ace file of the UniGene biog3_v1.0_unigene5297 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19295	65/65

Source	Descriptions	Term	Type	Identity
AutoFact	Peptidase M1 family protein n=8 Tax=Arabidopsis RepID=F4I3R0_ARATH	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	peptidase m1 family protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	apoplast	GO:0048046	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR09

Fln msg: your sequence is shorter than subject: 530 - 992

Fln protein: DAGPMAHPVRPHSYIKMDNFYTVTVYEKGAEVVRMYKTMLGQSGFRKGMDLYFQRHDGQAVTCEDFFAAMRDANNADLSNFLLWYSQAGTPVLKMQSSYNSEGNTYTLKFRQEIPPTPGQSVKEPMFIPVAVGLLDSNGKDLPLSSVYNRGSLQSFTSEGHSVSTVILRIEKEEEEFVFVDIPERPIPSLLRNYSAPVRLVSDITDDDLYFLLAHDSDEFNRWEAGQTLARKLMLSLVDKAQQNQPLSVDPKFVNGLRSILCDSSLDKEFIAKAITLPGEGEIMDLMEVADPDAVHGVRRFVRKQLASELRAEFCRAVETNRSSEEYDPNHESMARRALKNTALAYLASLNEPEMTELVLHEYKSATNMTEQFAALGAIAQNAGDVRDEVLSDFYQKWKEDALVINKWLALQAVSDIPGNVKNVQSLLEHPAFDIRNPNKVYSVIGGFCSSKVNFHAKDGSGYEFVGDMVLKIDKINPQVASRTISAFSRWKRFDEGRQTLAKAQLERILSSNGLSENVYEIALKSLAA*

Protein Length: 531

Fln nts: AGGACGCTGGTCCCATGGCTCACCCTGTGCGTCCACATTCATATATCAAGATGGACAATTTCTATACTGTAACGGTGTATGAGAAGGGAGCAGAAGTTGTCAGGATGTACAAGACCATGTTAGGGCAATCAGGGTTTCGTAAGGGAATGGATCTTTATTTTCAAAGACATGATGGGCAAGCAGTAACTTGTGAAGATTTCTTTGCTGCTATGCGTGATGCCAATAATGCAGATCTTTCAAATTTCTTGTTATGGTATTCACAAGCGGGAACCCCTGTTCTAAAAATGCAATCATCCTACAACTCTGAGGGAAATACTTATACACTTAAGTTCAGGCAAGAAATTCCTCCTACTCCAGGTCAATCAGTGAAAGAACCGATGTTTATACCTGTGGCCGTTGGGTTGCTGGATTCCAACGGAAAGGATCTGCCTCTTTCATCAGTCTATAATCGAGGATCTCTGCAGTCCTTTACTAGTGAAGGTCATTCCGTTTCAACAGTAATCCTCCGTATTGAAAAGGAGGAAGAAGAGTTTGTCTTTGTTGACATTCCTGAAAGACCAATTCCCTCTCTACTACGCAATTATAGTGCTCCTGTGCGTCTTGTTTCAGATATCACTGATGATGATTTGTACTTTCTACTTGCACATGATTCAGATGAGTTTAACCGGTGGGAGGCTGGCCAGACATTGGCAAGAAAACTCATGCTTTCTCTCGTAGATAAGGCACAACAGAATCAACCCTTGAGTGTGGACCCAAAATTTGTCAACGGACTAAGAAGTATTCTTTGTGATTCGAGTTTGGACAAAGAGTTCATAGCAAAGGCAATCACTCTACCTGGAGAGGGAGAAATCATGGACCTCATGGAAGTTGCAGATCCAGATGCTGTTCACGGAGTTCGTCGTTTTGTTAGAAAACAACTTGCGTCTGAATTGCGTGCAGAGTTTTGCAGAGCTGTTGAAACTAACCGAAGCTCAGAGGAATATGATCCTAATCACGAGAGCATGGCAAGACGTGCTTTGAAAAATACGGCCCTTGCTTACCTTGCCTCATTGAATGAGCCAGAAATGACAGAGCTTGTATTACATGAGTACAAATCAGCTACAAATATGACTGAACAATTTGCAGCTTTGGGTGCTATTGCCCAAAATGCCGGAGATGTACGAGATGAAGTTTTGTCTGATTTCTATCAGAAGTGGAAAGAAGATGCCTTGGTGATCAATAAGTGGCTTGCATTGCAAGCTGTCTCTGATATCCCGGGCAATGTTAAGAATGTACAAAGCTTGTTGGAGCACCCTGCTTTTGACATTCGGAATCCTAACAAGGTTTATTCTGTCATTGGAGGGTTCTGCAGCAGTAAGGTTAACTTCCATGCAAAAGATGGTTCTGGTTATGAATTCGTTGGAGATATGGTATTGAAGATAGATAAAATTAATCCACAGGTTGCATCCCGCACCATTTCAGCTTTCTCAAGGTGGAAGCGATTTGATGAGGGCAGACAAACTCTTGCAAAGGCTCAACTAGAGCGTATTCTATCATCCAATGGGTTGTCAGAAAACGTGTATGAGATTGCCTTGAAAAGTTTGGCTGCCTAG___TTGCGTAGGATACGGTTCTCTCACTTGCAAGCTATGATACTTGAAGGGTTAACTCAAGACCTTAAGAATGGTATAATCTACACGTTGCGTGTTGAATGATGAGATGCGGAGGCTGCGGTTACAACAAATCTTCGATGCTTGTTAATGAATGGTCATGGGTTAAATCTCGCCCTTTACAACTGTTCTTGTGCATGTATCCTGTCTTTTTGAGTACATTAAAAAAACAGTCGTTTATAGCAATCGATATAACGATCACAACAGTAGTCAACAATGGAATTGGATGTAATTATCGCATGTGAACTAGAAGACTAGCTGTATTAATTAATGTTGAGTGGATGTGCAGATCTGTAAAT

Fln Alignment:

Contig5297___DAGPMAHPVRPHSYIKMDNFYTVTVYEKGAEVVRMYKTMLGQSGFRKGMDLYFQRHDGQAVTCEDFFAAMRDANNADLSNFLLWYSQAGTPVLKMQSSYNSEGNTYTLKFRQEIPPTPGQSVKEPMFIPVAVGLLDSNGKDLPLSSVYNRGSLQSFTSEGHSVSTVILRIEKEEEEFVFVDIPERPIPSLLRNYSAPVRLVSDITDDDLYFLLAHDSDEFNRWEAGQTLARKLMLSLVDKAQQNQPLSVDPKFVNGLRSILCDSSLDKEFIAKAITLPGEGEIMDLMEVADPDAVHGVRRFVRKQLASELRAEFCRAVETNRSSEEYDPNHESMARRALKNTALAYLASLNEPEMTELVLHEYKSATNMTEQFAALGAIAQNAGDVRDEVLSDFYQKWKEDALVINKWLALQAVSDIPGNVKNVQSLLEHPAFDIRNPNKVYSVIGGFCSSKVNFHAKDGSGYEFVGDMVLKIDKINPQVASRTISAFSRWKRFDEGRQTLAKAQLERILSSNGLSENVYEIALKSLAA
B8LR09_________________DAGPMAHPVRPHSYIKMDNFYTVTVYEKGAEVVRMYKTLLGQSGFRKGMDLYFQRHDGQAVTCEDFFAAMRDANDADFSNFLLWYSQAGTPVLKVKSSYNSEGNTYTLKIRQEIPSTPGQSVKEPMFIPVAVGLLDSNGKDLPLTSVYNGESLQSLTSEGHSVSTVILRIEKEEEEFVFVDIPERPIPSVLRNYSAPVRLVSDITDDDLYFLLAHDSDEFNRWEAGQTLARKLMLSLVDQAQQNQPLTIDPKFVNALRSILCDSSLDKEFIAKAITLPGEGEIMDRMEVADPDAVHGVRRFFIKQLASELRAEFLRAVKTNQSSEEYDPNHESMASRALKNTALAYLASLKEPEMTELVLHEYKSATNMTEQFAALAAISQNAGDVRDGVLSDFYQKWEGDALVINKWLALQAVSDIPGNVKNVQRLLQHPAFDIRNPNKVYSLIGGFCSSSVNFHAKDGSGYEFIGDMVLKIDKINPQVASRNISAFSRWKRFDEGRQTLAKAQLERILSSNGLSENVYEIALKSLAA

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
255		33		66	1.0
371		16		66	0.988813
372		80		20	0.995493
374	80			20	0.995493
375			80	20	0.995493
466	16	83			0.994512
467		16	83		0.994512
468	16	83			0.994512
533	75			25	0.996473
537	14	85			0.993533
540	85		14		0.993533
559	14	85			0.993533
562			85	14	0.993533
563	85			14	0.993533
618	80			20	0.995493
663		88		11	0.923564
664	88		11		0.923564
692		50	50		1.0
723	11	88			0.923564
797		50	50		1.0
871	88	11			0.923564
872	11		77	11	0.968132
873		77	11	11	0.968132
885	12			87	0.992554
886	14		85		0.993533
898	14		85		0.993533
900			85	14	0.993533
903	85			14	0.993533
904	85			14	0.993533
905			85	14	0.993533
1018			25	75	0.996473
1019		75		25	0.996473
1034	25			75	0.996473
1035		25		75	0.996473
1036	25	75			0.996473
1038	75			25	0.996473
1225	10			90	0.90298
1226			10	90	0.90298
1239	66		33		1.0
1301			88	11	0.923564
1330			87	12	0.992554
1437	85		14		0.993533
1438		85		14	0.993533
1449	14			85	0.993533
1450			85	14	0.993533
1464	87			12	0.992554
1492	11	88			0.923564
1493	11	88			0.923564
1495		88	11		0.923564
1496			88	11	0.923564
1498		11		88	0.923564
1499	11			88	0.923564
1500	88			11	0.923564
1605			11	88	0.923564
1637	12	87			0.992554
1640		87		12	0.992554
1672		33	66		1.0
1673	33		66		1.0
1674			66	33	1.0
1675			66	33	1.0
1715		87	12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain