SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5280

Length: 721 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5280 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10955	6/7
SustainPine v2.0	sp_v2.0_unigene36166	1/7

Source	Descriptions	Term	Type	Identity
AutoFact	Cdk10/11, putative n=1 Tax=Ricinus communis RepID=B9RML9_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	cyclin-dependent kinase g-2-like	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	90%
Blast2go	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	cytosol	GO:0005829	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Gonadotropin-releasing hormone	IPR002012	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Remorin, C-terminal	IPR005516	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	IPR013528	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
68			66	33	0.997452
69	66		33		0.997452
377	33		66		0.997452
439		33	66		0.997452
505	66		33		0.997452
506	66			33	0.997452
510	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain