SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5252

Length: 926 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5252

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7360	11/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial glycoprotein family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KDK7_ARALL	-	-	1.0e-35	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	mitochondrial glycoprotein family protein	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial glycoprotein	IPR003428	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8G6

Fln msg:

Fln protein: MVAALMYSLARTRSLVGRKVITLLTNLDTHHSNGKAFHSTKLCNISTTTMRRWGSIWRPVPLQFQSPYVCGLSIATVSSSSFEGNLVRLLQSEIKYEIDSNPPTQIPHDNIPFIVKDKPGEQWIALHRKYGKENIKVEATMLDLGSADSHEDLGEDDIPCKICLAVTISKDEATKSMMIGCSGYPDEITVDRVVIMEAESSQELTYEGPGFECMKEDLQRAFQEFLQERGIDDDLSNFLYEYMMNKSKKEYLTWLQSLQSFIEK*

Protein Length: 266

Fln nts: TTGTCCTTAAACCCTAGCAGGGTGACTGTTACTGCTGCCTTGTACAATTTTAGGGCTAACTGCGTCTGAACGAGTTCTGATAGCACAGTCTAGAAAACT_-_ATGGTGGCAGCATTAATGTATTCTCTTGCAAGGACAAGATCGCTTGTGGGAAGGAAGGTGATTACACTCCTTACAAATCTTGATACTCACCACTCAAATGGGAAGGCTTTTCATTCCACAAAATTATGCAACATCAGCACCACGACGATGAGGAGATGGGGATCGATTTGGAGACCAGTACCATTACAATTTCAATCACCATATGTGTGCGGTCTATCTATTGCAACAGTCTCCTCCTCTTCGTTTGAGGGCAACCTTGTGCGCCTGCTACAGTCGGAGATCAAATACGAAATCGACTCCAATCCACCCACTCAGATTCCTCATGACAACATTCCCTTCATTGTTAAAGACAAGCCGGGTGAGCAATGGATAGCATTGCACAGGAAATATGGCAAGGAAAACATAAAGGTAGAAGCTACAATGCTTGATCTAGGTTCAGCTGACTCACATGAGGATCTTGGGGAAGATGATATACCGTGTAAAATTTGTCTAGCAGTTACCATTTCTAAAGATGAAGCAACTAAGTCAATGATGATCGGATGTTCTGGATATCCTGATGAGATAACGGTTGACCGAGTGGTAATCATGGAAGCAGAATCATCTCAGGAATTGACTTATGAAGGGCCGGGTTTTGAGTGCATGAAAGAAGATCTCCAGAGAGCTTTCCAAGAGTTCTTACAGGAACGAGGTATTGATGACGATCTATCAAACTTTTTGTACGAGTACATGATGAATAAGTCGAAGAAGGAATATCTTACTTGGTTACAAAGTCTACAGTCCTTTATAGAAAAATAG___ATGAGATTCAATCTCTCATGTTGAGTGCTACA

Fln Alignment:

Contig5252___AALMYSLARTRSLVGRKVITLLTNLDTHHSNGKAFHSTKLCNISTTTMRRWGSIWRPVPLQFQSPYVCGLSIATVSSSSFEGNLVRLLQSEIKYEIDSNPPTQIPHDNIPFIVKDKPGEQWIALHRKYGKENIKVEATMLDLGSADSHEDLGEDDIPCKICLAVTISKDEATKSMMIGCSGYPDEITVDRVVIMEAESSQELTYEGPGFECMKEDLQRAFQEFLQERGIDDDLSNFLYEYMMNKSKKEYLTWLQSLQSFIEK
D5A8G6_________________AALMYSLARTGSRVGRKVITIFTNLDAHHSNGRAFHSTKLYNRSTTTMRGWGSIWTPLPLQLQSPYGCGRSIATVSSSSSEGNLVRLLQSEIKYEIDSNPPAQIPHDNIPFIVKDMPGEQWIVLHRKYGKENIKVEATMLDLGSSDSHEDLGEDDIPCKICLAVTISRDEAPKSMMIGCSGYPDEITVDRVVIMEAESSHELTYEGPGFERMNENLQKAFQEFLQERGIDDDLSNFLYEYMINKCKKEYLNWLQSLQSFVEK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
18	33	66			0.997452
22			66	33	0.997452
508			60	40	1.0
703	16			83	0.994512
706			83	16	0.994512
707			83	16	0.994512
879	33	66			0.997452
881	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain