SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5243

Length: 889 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5243 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18305	9/25
SustainPine v2.0	sp_v2.0_unigene29655	16/25

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam03168, LEA_2, Late embryogenesis abundant protein	-	-	3.0e-21	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	late embryogenesis abundant protein lea14-	-	-	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Late embryogenesis abundant protein, LEA-14	IPR004864	-	0.0	-
Sma3	Water stress and hypersensitive response domain	IPR013990	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWK2

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 283 - 326

Fln protein: MSSSEEIGKQKDKEETSVTERGLKGDKKDGDKDEDKGGFIEKVKDFIHDIGEKIEEAIGFGKPTADVTGIHIPSINLKKAEIVVDVRINNPNPVPIPLVDIDYLVESDGRKLVSGLIPDAGTIHAHGSETLKIPITIIYDDIKDTYDDIKPGSIIPYKIKVGLIADVPVFGKITLPLEKEGDFPVPYKPDVDLEKVEFDSFSFEETSATLHLKLENKNDFDLGLNALEYEVWLAEVSIVSAKLDKSAKLDKNGISYIELPFSFRPKDFGSALWDMIRGKGAGY

Protein Length: 284

Fln nts: AATGTAAATAGATCTAACTAGTGTCTAATTTGTGAAGACA_-_ATGTCATCGTCTGAGGAGATCGGGAAGCAGAAGGACAAAGAAGAGACATCTGTGACCGAGAGAGGTCTGAAAGGAGACAAAAAGGATGGAGATAAGGACGAGGATAAGGGTGGATTCATTGAGAAGGTGAAGGACTTCATCCATGACATAGGAGAGAAGATTGAGGAAGCTATTGGTTTTGGAAAACCGACGGCAGATGTCACAGGAATCCACATTCCATCTATCAATCTGAAGAAGGCTGAAATTGTTGTCGATGTGCGTATAAATAATCCCAACCCTGTTCCGATCCCTTTGGTGGACATTGATTATCTAGTAGAGAGCGATGGCAGGAAGCTTGTCTCTGGATTGATCCCTGATGCGGGCACAATTCATGCCCATGGGTCTGAAACTCTGAAGATCCCCATAACAATAATCTACGATGATATCAAGGACACTTATGATGATATCAAGCCCGGAAGCATTATTCCTTACAAGATTAAGGTTGGCCTTATTGCAGACGTGCCTGTCTTTGGCAAGATAACGTTGCCTCTGGAAAAGGAGGGAGATTTTCCCGTGCCTTACAAACCTGATGTTGATCTGGAGAAGGTGGAATTCGATAGTTTCTCCTTCGAAGAAACTTCAGCAACATTGCATTTGAAACTGGAGAATAAAAATGATTTTGATCTCGGCTTGAATGCGCTGGAATATGAGGTCTGGCTTGCTGAGGTGAGCATTGTAAGTGCGAAGCTGGATAAGTCCGCGAAGCTTGATAAGAATGGAATCAGCTACATTGAGTTGCCTTTTTCCTTTAGGCCAAAGGATTTTGGATCTGCTCTCTGGGACATGATTAGAGGCAAGGGTGCTGGATAT

Fln Alignment:

Contig5243___MSSSEEIGKQKDKEETSVTERXXXXXXXXXXXXXXXXGFIEKVKDFIHDIGEKIEEAIGFGKPTADVTGIHIPSINLKKAEXXXXXXXXXXXXXXXXXXXXDYLVESDGRKLVSGLIPDAGTIHAHGSETLKXXXXXXXXXXXXXXXXXXPGSIIPYKIKVGLIADVPVFGKITLPLEKEGDFPVPYKPDVDLEKVEFDSFSFEETSATLHLKLENKNDFDLGLNALEYEVWLAEVSIVSAKLDKSAKLDKNGISYIELPFSFRPKDFGSALWDMIRGKGAGY
A9NWK2_________________MSSSEEMEKQKEKEETSVIERGLKKDKKDEDEDEEKGGFIDKVKDFIQNIGEKIEEAIGFGKPTADVSGIHIPSINLKKLEIVVDVLITNPNPVPIPLVDIDYLVESNGRKLVSGLIPDAGTIHAHGSETIKIPITIIYDDIKDTYDDIKPGSIIPYKIKVGLIADVPVFGKLTLPLEKEGEIPVPYKPDVDLDKVEFDSFSFEETSATLHMKLENKNDFDLGLNALEYEVWLSGVSIVNAKLSKSAKVEKNGISYIQLPVSFRPKDFGSALWDMIRGKGAGY

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
869		20	80		0.995493
871		80		20	0.995493
872	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain