SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5214

Length: 751 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5214 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8418	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] dbj\|BAB09065.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED95052.1\| mate efflux domain-containing protein [Arabidopsis thaliana]	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	mate efflux domain-containing protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	70%
Blast2go	fruit ripening	GO:0009835	Biological Process	70%
Blast2go	antiporter activity	GO:0015297	Molecular Function	70%
Blast2go	drug transmembrane transporter activity	GO:0015238	Molecular Function	70%
Blast2go	membrane	GO:0016020	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Allinase, C-terminal	IPR006948	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
259	20			80	0.995493
260	20	80			0.995493
262		80	20		0.995493
263		80		20	0.995493
374	20		80		0.995493
375	20			80	0.995493
436	20		80		0.995493
437	20			80	0.995493
440			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain