SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5212

Length: 307 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene5212
TTATTCGTCAACTTTTGGTGAAAGACTCTTCACAAAGATTGCCCCTACTTAAAGTTCTTCAACATCCCTGGATTTTTCAAAACGCTGATCCTGATGGCGTTTACAAGACAGGACATTGAAGAATGTAGTGATTGTTGCTTCATCTCTGGATTGTTCAAACTGCTGATCCTGACGGTATTTACAAGGCACCGCTGCATTGAATAACGTACTGATTGTTCTACATGAAGTTCTCCAACAGATCTGAATTGTTCAAAATGCTCATCCCCATGATAGTGTTTACGAGGCACTGTATTGAATAACGTACATT

Ace file of the UniGene biog3_v1.0_unigene5212 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10499	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine-protein kinase aurora-1 [Arabidopsis thaliana] sp\|Q9M077.1\|AUR1_ARATH RecName: Full=Serine/threonine-protein kinase Aurora-1; Short=AtAur1; AltName: Full=Aurora-like kinase 1 emb\|CAB80000.1\| putative serine/threonine protein kinase [Arabi	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	serine threonine-protein kinase aurora-1	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	histone H3-S10 phosphorylation	GO:0043987	Biological Process	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	histone kinase activity (H3-S10 specific)	GO:0035175	Molecular Function	91%
Blast2go	nucleolus	GO:0005730	Cellular Component	91%
Blast2go	spindle	GO:0005819	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX61

Fln msg: your sequence is shorter than subject: 39 - 302

Fln protein: IRQLLVKDSSQRLPLLKVLQHPWIFQNADPDGVYKTGH*

Protein Length: 40

Fln nts: TTATTCGTCAACTTTTGGTGAAAGACTCTTCACAAAGATTGCCCCTACTTAAAGTTCTTCAACATCCCTGGATTTTTCAAAACGCTGATCCTGATGGCGTTTACAAGACAGGACATTGA___AGAATGTAGTGATTGTTGCTTCATCTCTGGATTGTTCAAACTGCTGATCCTGACGGTATTTACAAGGCACCGCTGCATTGAATAACGTACTGATTGTTCTACATGAAGTTCTCCAACAGATCTGAATTGTTCAAAATGCTCATCCCCATGATAGTGTTTACGAGGCACTGTATTGAATAACGTACATT

Fln Alignment:

Contig5212___IRQLLVKDSSQRLPLLKVLQHPWIFQNADPDGVYKTGH
A9NX61_________________IRQLLVKDSSQRLPLHKVLQHPWIFQNADPDGVYKALH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain