SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5208

Length: 537 nt

UniGene Fasta

>biog3_v1.0_unigene5208
AATGTATGAATGATGATTATCAAATTTCTGCAGTGCCTCCCAATGGATGTACTCCAATTCTTTTAAATCTTGTGGCCAGGCATGGAACTCGTGCACCGACCAAGAAGCGCATAAAGGAGCTAGTGCAATTATCTATACGTTTGGAGAGTCTTTTGAAGTCTGCAGATGATACACTTACAGGGGAAACACATGGTTCACAACAAATACCATCATGGCTGAGGGGCTGGCAATGTCCCTGGGACATAAAGAAAACAAATGGAGAATTAACACGTGAAGGTGAGGAAGAGTTGTATAATCTGGGAATGAGGTTAAGGGAAAGGTTTCCCCAGATATTTGATGAAGATTATCATCCTGATGTTTACTTGATAAGTGCAACTCAGGTCCCTCGTGCTTCAGCTAGTGCAGTTGCATTTGGCATGGGGCTTTTTGCTGGGAAAGGAGTTCTTGGAGCAGGCCAGCATCATGCATTTGCTGTTATAACTGACAGTCGAGCAAATGATATCCATTTACGATTTCATGATACTTGCCAAACATACA

Ace file of the UniGene biog3_v1.0_unigene5208

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4429	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 2)	-	-	6.0e-32	26%
FL-Next	tr=Alkaline phytase isoform 1; Lilium longiflorum (Trumpet lily).	-	-	0.0	63%
Blast2go	protein	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric monoester hydrolases.	EC:3.1.3.-	-	0.0	70%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	70%
Blast2go	Ascorbate and aldarate metabolism	00053	70%
Blast2go	Lipopolysaccharide biosynthesis	00540	70%
Blast2go	Ether lipid metabolism	00565	70%
Blast2go	Sphingolipid metabolism	00600	70%
Blast2go	Thiamine metabolism	00730	70%
Blast2go	Riboflavin metabolism	00740	70%
Blast2go	Nicotinate and nicotinamide metabolism	00760	70%
Blast2go	Metabolic pathways	01100	70%
Blast2go	Biosynthesis of secondary metabolites	01110	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphatase activity	GO:0016791	Molecular Function	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	0.0	-
Sma3	Histidine acid phosphatase, eukaryotic	IPR016274	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q0GYS1

Fln msg: Distance to subject end: 272 aas, your sequence is shorter than subject: 178 - 489

Fln protein: CMNDDYQISAVPPNGCTPILLNLVARHGTRAPTKKRIKELVQLSIRLESLLKSADDTLTGETHGSQQIPSWLRGWQCPWDIKKTNGELTREGEEELYNLGMRLRERFPQIFDEDYHPDVYLISATQVPRASASAVAFGMGLFAGKGVLGAGQHHAFAVITDSRANDIHLRFHDTCQTY

Protein Length: 179

Fln nts: AATGTATGAATGATGATTATCAAATTTCTGCAGTGCCTCCCAATGGATGTACTCCAATTCTTTTAAATCTTGTGGCCAGGCATGGAACTCGTGCACCGACCAAGAAGCGCATAAAGGAGCTAGTGCAATTATCTATACGTTTGGAGAGTCTTTTGAAGTCTGCAGATGATACACTTACAGGGGAAACACATGGTTCACAACAAATACCATCATGGCTGAGGGGCTGGCAATGTCCCTGGGACATAAAGAAAACAAATGGAGAATTAACACGTGAAGGTGAGGAAGAGTTGTATAATCTGGGAATGAGGTTAAGGGAAAGGTTTCCCCAGATATTTGATGAAGATTATCATCCTGATGTTTACTTGATAAGTGCAACTCAGGTCCCTCGTGCTTCAGCTAGTGCAGTTGCATTTGGCATGGGGCTTTTTGCTGGGAAAGGAGTTCTTGGAGCAGGCCAGCATCATGCATTTGCTGTTATAACTGACAGTCGAGCAAATGATATCCATTTACGATTTCATGATACTTGCCAAACATACA

Fln Alignment:

Contig5208___PNGCTPILLNLVARHGTRAPTKKRIKELVQLSIRLESLLKSADDTLTGETHGSQ---QIPSWLRGWQCPWDIKKTNGELTREGEEELYNLGMRLRERFPQIFDEDYHPDVYLISATQVPRASASAVAFGMGLFAGKGVLGAGQHHAFAVITDSRANDIHLRFHDTCQTY
Q0GYS1_________________PDGCRAIHLNLVARHGTRAPTKKRIKEMDQLAIRLDALLTDAKE----KTHDSSLPPNIPSWLSGWQSPWKGRQTGGELISKGEDELYHLGTRIRERFPDLFDEEYHPHIYSIRATQVPRASASAVAFGIGLFSGRGHLGPGKNRAFSVISESRASDTCLRFFDSCETY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
126	20		80		0.995493
129		80		20	0.995493
258	80	20			0.995493
261			80	20	0.995493
262	20		80		0.995493
266	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain