SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5195

Length: 1182 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5195

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1658	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens RepID=A9TAE9_PHYPA	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	50%

Source	InterPros	Term	Type	Identity
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Transcription factor, SBP-box	IPR004333	-	-
Sma3		IPR015706	-	-
Sma3	Squamosa promoter-binding protein	IPR017238	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB60

Fln msg: Distance to subject end: 32 aas, your sequence is longer than subject: 379 - 160

Fln protein: MVPRCQVEGCEMELTAAKDYHRRHKVCELHSKFPKVIVNGIEQRFCQQCSRFHTLSEFDEGKRSCRRRLAGHNQRRRKPQLNSTAMKAARFASTFYDDGDGRLSSILMARSPFMHPRIASNLEENSLDFKLGGYGKGAWPRVKAEDVSSYDGQLSANTLSRHNAERLLFLLQGSKTVPGGAINQGIHQYRQSSRDHVGQSLTLSSSSGENLAGLSVISAPHGLSGVSDSGCALSLLSIQSGGPRSSGSASFDMTTRSGLTMDQLILEDQPLMAQAPLMQGVQHNFGLFAEDKLLTMYPQSSTNLATGGFPAAIVNSMDKQHHGHPLVSDAGQMANFGGNIFGLLQGSSFRGSQAASSQDIQGTIDLMCTSSETQTNDST

Protein Length: 380

Fln nts: TCCGGCTGCCAAGAAGCAGCAGTCTGCGTTGCAGGGAACGCAT_-_ATGGTGCCGCGGTGTCAGGTGGAGGGATGCGAGATGGAACTCACCGCCGCAAAGGACTACCACCGCCGCCACAAGGTCTGCGAGCTCCACTCCAAGTTTCCCAAGGTCATCGTCAACGGGATCGAGCAGCGCTTCTGTCAGCAATGTAGCAGGTTTCATACGTTGTCTGAGTTTGATGAAGGGAAGCGGAGCTGTCGGAGGCGTCTAGCGGGGCACAACCAGCGGCGTAGGAAACCCCAACTTAATTCAACGGCGATGAAAGCTGCAAGATTTGCTTCCACCTTCTATGATGACGGGGACGGGCGACTTAGCAGCATCCTGATGGCTAGATCACCTTTCATGCATCCACGGATAGCTTCAAACTTGGAGGAGAATTCGCTCGATTTCAAACTTGGAGGATATGGAAAAGGAGCTTGGCCGAGGGTTAAGGCAGAGGATGTATCATCATATGATGGGCAATTATCAGCAAATACTCTCTCCCGTCATAATGCTGAAAGGTTGCTTTTCCTTTTACAGGGTTCTAAGACTGTACCTGGTGGAGCTATTAATCAAGGCATTCATCAGTACAGGCAAAGCTCCAGGGATCATGTGGGCCAATCCTTGACCTTGTCATCCTCCTCGGGAGAAAATCTAGCAGGTTTAAGTGTTATATCTGCCCCACATGGTTTATCAGGAGTCTCGGACTCTGGCTGTGCTCTCTCTCTTCTGTCAATTCAATCCGGGGGCCCAAGGTCCTCAGGATCAGCTTCATTTGATATGACCACGCGGTCAGGTCTCACAATGGATCAACTTATACTAGAGGATCAACCTCTTATGGCTCAAGCACCATTGATGCAAGGAGTACAACACAACTTTGGTCTTTTTGCAGAAGACAAGTTACTAACAATGTATCCCCAGTCCTCTACTAATCTTGCAACAGGTGGGTTCCCTGCAGCTATTGTGAATTCTATGGATAAGCAGCACCATGGTCATCCACTCGTTTCCGATGCAGGCCAAATGGCAAACTTTGGAGGAAATATATTTGGCTTGCTGCAGGGGAGCAGTTTCAGAGGCTCTCAAGCTGCGAGTTCACAAGATATTCAAGGCACCATAGATCTGATGTGCACGTCCTCGGAAACACAAACTAATGATTCTACATT

Fln Alignment:

Contig5195___MTTRSGLTMDQLILEDQPLMAQAPLMQGVQHNFGLFAEDKLLTMYPQSSTNLATGGFPAAIVNSMDKQHHGHPLVSDAGQMANFGGNIFGLLQGSSFRGSQAASSQDIQGTIDLMCTSSETQTNDS
D5AB60_________________MTRRSDLTVDQLILENQPLMAQPPLMQGVQHNFGLFAADKLLTICSQSSTNLATGGFPATVVDSMDKQHQGESLVSNADGIGNFGGYTFGLPQGSSFRGSQAASSQDIQGTIDLMCRSSETQTNDS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
393	20		80		0.995493
394		20	80		0.995493
397	80			20	0.995493
473	25		75		0.996473
476			75	25	0.996473
477	75			25	0.996473
845	28		71		1.0
846	85			14	0.993533
848		83		16	0.994512
1000	14		85		0.993533
1003			85	14	0.993533
1004		85		14	0.993533
1043	33		66		0.997452
1066	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain