SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5193

Length: 1097 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5193 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1255	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	nucleotidyl transferase domain-containing protein [Arabidopsis thaliana] gb\|AAM53306.1\| unknown protein [Arabidopsis thaliana] dbj\|BAD44371.1\| unknown protein [Arabidopsis thaliana] gb\|AEC05417.1\| nucleotidyl transferase domain-containing protein [Arabido	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	nucleotidyl transferase domain-containing protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Nucleotidyltransferases.	EC:2.7.7.-	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	78%
Blast2go	Lipopolysaccharide biosynthesis	00540	78%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053	78%
Blast2go	Metabolic pathways	01100	78%

Source	GOs	Term	Type	Identity
Blast2go	biosynthetic process	GO:0009058	Biological Process	78%
Blast2go	nucleotidyltransferase activity	GO:0016779	Molecular Function	78%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABL8

Fln msg: your sequence is shorter than subject: 241 - 390

Fln protein: VLIKGIANACKVSMEPVREFRDNEVIEESEESYDEDQQLEQLLSGQICMKVYSFEKGIHVPKSGRRLILSGSFNPLHKGHLKLLEVASSICKDGFPCFEISAINADKPPLTLKQIKDRVKQFDAEGKTVIITDQPYFYKKAELLPDSTFIIGADTAARLINPKYYDNNSERMLEVLLGVKQLGCNFLVGGRIVDGTFKVLSDLDIPEQLRDMFMSIPEGLFRMDISSTEIREKIGGCTDP*

Protein Length: 242

Fln nts: AGTTTTAATCAAGGGAATAGCTAATGCGTGCAAGGTCTCGATGGAACCAGTTAGGGAGTTTCGTGATAATGAAGTAATTGAGGAGTCTGAAGAGTCTTATGATGAAGACCAACAATTGGAGCAACTTTTATCTGGACAAATATGCATGAAAGTTTACTCATTTGAGAAAGGAATACATGTTCCCAAGTCAGGAAGAAGATTAATTTTGTCTGGGTCTTTTAATCCCTTACATAAAGGCCATCTGAAGCTTTTGGAGGTAGCTTCCAGTATATGTAAAGATGGATTTCCATGCTTTGAAATCTCAGCTATCAATGCTGACAAGCCCCCATTGACACTGAAACAAATCAAGGATAGAGTAAAACAATTTGATGCAGAAGGGAAAACAGTCATTATAACAGATCAGCCATACTTTTACAAGAAAGCAGAACTTTTACCAGATAGTACTTTCATAATTGGGGCAGACACTGCTGCTAGGCTTATCAATCCAAAGTATTATGACAACAACTCTGAAAGAATGTTGGAAGTGCTATTAGGTGTGAAACAGCTTGGTTGCAACTTCCTCGTAGGTGGTAGGATTGTTGATGGCACCTTCAAGGTTCTATCAGATTTGGATATTCCTGAGCAGTTGAGGGACATGTTTATGTCAATACCTGAAGGTCTGTTTCGTATGGACATATCCTCAACAGAAATTAGAGAAAAGATTGGTGGGTGTACTGATCCCTAG___GGGTAAATATCCAATGTGCCATGGCAGTGGGCTATGAAAGTTAGAGCAAGTCCACGCTGTGCTTGTTATGATGCTTTTAAATCATTGAAGCAGTTTCTGAAAGTTCTAATGGATTATATGTAGCCTACCAATTGGAATAGGAATCATGTTGTAAGTGACATACAAGGAATGATAACAATGCCATTTCTGTTTCTCTTAATTTATTCAATACTAATTGGAAAGCTATATTGTAAAATTCTCGCTTTAGATTTCAATTATTTACACTCAGCAATGTTGCTGAAGTTGTATCTTTTAGCACAAATCCTTAAGATATCTACATAATTGATATAAAATTGAAATGTTGCAACTGATTGAATAGGTGATACAGATATGA

Fln Alignment:

Contig5193___VLIKGIANACKVSMEPVREFRDNEVIXXXXXXXXXXXXXXXXXSGQICMKVYSFEKGIHVPKSGRRLILSGSFNPLHKGHLKLLEVASSICKDGFPCFEISAINADKPPLTLKQIKDRVKQFDAEGKTVIITDQPYFYKKAELLPDSTFIIGADTAARLINPKYYDNNSERMLEVLLGVKQLGCNFLVGGRIVDGTFKVLSDLDIPEQLRDMFMSIPEGLFRMDISSTEIREKIGGCTDP*G
D5ABL8_________________LLLKGIANACKVSMESIREFCDNEVIEESEESYDEDQQLEQLLSGQICMKVYSFEKGIHVPKSGRRVILSGSFNPLHEGHLKLLEVASSISKDGFPCFEISAINADKPPLTLKQIKDRVKQFEAVGKTVIITNQPYFYKKAEVLPDSTFIIGADTAARLIDPKYYDNNSERMLEVLLGVKQLGCNFLVGGRIVDDTFKVLSDFDVPEQLRDMFLSIPEGLFRMDISSTEIRAKLGGCTDPLG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
594	16		83		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain