SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5170

Length: 283 nt

UniGene Fasta

>biog3_v1.0_unigene5170
TGCTAAATTCTTCTTATGTGATATCCAGTCCATCTGACTGCCAAAACTCTGAAGCTTTTAACAAGACTATGGTTGAGGGGAACATTCTAGTTTGTGGATATTCATACAACTTTGCATATGGTGCTGCATCTGTAAGACGCCTGTCAGAAACTGCAAAGAGTTTAGGTGCAGTTGGGTTCATTCTGGCTGTGGAGAATCCATCTCCGGGAGCTAAATTTGATCCAGTTCCAGTGGGAATTCCAGGAATTGTTATAAAAGAAGTAGATCAAACACAGATTACATT

Ace file of the UniGene biog3_v1.0_unigene5170

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene734	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	subtilisin-like serine protease 3 [Arabidopsis thaliana] gb\|AAD12040.1\| subtilisin-like serine protease [Arabidopsis thaliana] gb\|AAK93686.1\| putative subtilisin serine protease [Arabidopsis thaliana] gb\|AAM91760.1\| putative subtilisin serine protease [Ar	-	-	59%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	65%
Blast2go	subtilisin-like serine protease	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	negative regulation of catalytic activity	GO:0043086	Biological Process	78%
Blast2go	identical protein binding	GO:0042802	Molecular Function	78%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	plant extracellular matrix	GO:0048196	Cellular Component	78%
Blast2go	cell wall	GO:0005618	Cellular Component	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8A, DUF1034 C-terminal	IPR010435	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HB00

Fln msg: Distance to subject end: 315 aas, your sequence is shorter than subject: 93 - 817

Fln protein: LNSSYVISSPSDCQNSEAFNKTMVEGNILVCGYSYNFAYGAASVRRLSETAKSLGAVGFILAVENPSPGAKFDPVPVGIPGIVIKEVDQTQIT

Protein Length: 94

Fln nts: TGCTAAATTCTTCTTATGTGATATCCAGTCCATCTGACTGCCAAAACTCTGAAGCTTTTAACAAGACTATGGTTGAGGGGAACATTCTAGTTTGTGGATATTCATACAACTTTGCATATGGTGCTGCATCTGTAAGACGCCTGTCAGAAACTGCAAAGAGTTTAGGTGCAGTTGGGTTCATTCTGGCTGTGGAGAATCCATCTCCGGGAGCTAAATTTGATCCAGTTCCAGTGGGAATTCCAGGAATTGTTATAAAAGAAGTAGATCAAACACAGATTACATT

Fln Alignment:

Contig5170___LNSSYVISSPSDCQNSEAFNKTMVEGNILVCGYSYNFAYGAASVRRLSETAKSLGAVGFILAVENPSPGAKFDPVPVGIPGIVIKEVDQT
B9HB00_________________LDSSVMKYSPSDCQRPEVLNKNLVEGNVLICGYSFNFVVGTASIKKVSETAKSLGAIGFVLAVENVSPGTKFDPVPVGIPGILITDVTKS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
138	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain