SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5139

Length: 992 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5139

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25356	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Hexokinase n=1 Tax=Citrus sinensis RepID=Q9FVD3_CITSI	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	hexokinase 1	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glucokinase.	EC:2.7.1.2	-	0.0	77%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010		77%
Blast2go	Galactose metabolism	00052		77%
Blast2go	Starch and sucrose metabolism	00500		77%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		77%
Blast2go	Biosynthesis of phenylpropanoids	01061		77%
Blast2go	Biosynthesis of terpenoids and steroids	01062		77%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063		77%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		77%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065		77%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066		77%
Blast2go	Biosynthesis of plant hormones	01070		77%
Blast2go	Metabolic pathways	01100		77%
Blast2go	Biosynthesis of secondary metabolites	01110		77%
Blast2go	Fructokinase.	EC:2.7.1.4	-	77%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	77%
Blast2go	Starch and sucrose metabolism	00500	77%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	programmed cell death	GO:0012501	Biological Process	77%
Blast2go	response to fructose stimulus	GO:0009750	Biological Process	77%
Blast2go	hexose catabolic process	GO:0019320	Biological Process	77%
Blast2go	glucose mediated signaling pathway	GO:0010255	Biological Process	77%
Blast2go	glucose 6-phosphate metabolic process	GO:0051156	Biological Process	77%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	glucokinase activity	GO:0004340	Molecular Function	77%
Blast2go	fructokinase activity	GO:0008865	Molecular Function	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3		IPR001092	-	-
Sma3	Hexokinase	IPR001312	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRJ7

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 330 - 551

Fln protein: SGMSWTPWKSEMFAGLVSEKGSRLQMLLSYVENLPTGHENGLFYALDLGGTNFRVLRVQLGGSERRVVNQEFEEVPIPQNLMVSTSKELFDYIASELVRFVATEGENFHLPPGQQREIGFTFSFPVKQTSIDSGTLVNWTKGFSVPDMIGKDVVATLNEALQRQGLDMRVAALVNDTVGTLAGGRYWNKDVMAAVILGLELCMLCGTCRCNSRGKGTTSNIWQHGHKHGVGELLVFTSSCDGI*QGS*NSKTINPGYQLFEKLISGFYLGDIVRRVLLRMSEETSLFEHNVLPKLSVPFILRTPDMSAMHEDTSPKLEVVKKNCRMYLEY

Protein Length: 331

Fln nts: CTCAGGGATGTCGTGGACGCCATGGAAGTCCGAGATGTTCGCGGGACTTGTTTCGGAGAAGGGGAGTAGGCTGCAGATGCTGTTAAGCTACGTGGAGAATTTGCCCACTGGGCATGAAAATGGACTCTTTTATGCACTGGATCTTGGTGGAACCAATTTTCGAGTTTTGCGTGTCCAATTGGGTGGTAGTGAAAGACGGGTTGTTAACCAAGAATTTGAAGAAGTTCCCATTCCTCAAAACCTGATGGTTAGCACAAGCAAGGAGTTGTTTGACTACATTGCTTCTGAACTTGTAAGATTTGTTGCAACTGAGGGTGAGAACTTCCATTTACCTCCTGGTCAACAAAGGGAGATTGGCTTCACGTTTTCCTTTCCGGTGAAGCAAACATCAATTGACTCTGGCACGCTTGTAAATTGGACAAAGGGGTTTTCTGTCCCCGATATGATTGGCAAGGATGTTGTGGCAACTTTAAATGAGGCCCTTCAAAGGCAGGGTTTGGATATGCGTGTTGCTGCACTGGTTAATGATACTGTTGGAACATTGGCTGGAGGACGTTACTGGAATAAAGATGTCATGGCTGCTGTTATTCTGGGACTGGAACTATGCATGCTATGTGGAACGTGCAGATGCAATTCCAGAGGCAAAGGGACTACATCAAACATCTGGCAACATGGTCATAAACATGGAGTGGGGGAACTTCTGGTCTTCACATCTTCCTGTGACGGAATTTGACAAGGCTCTTAGAATTCCAAAACTATTAATCCTGGTTATCAGCTATTTGAGAAGCTAATATCAGGATTCTACCTGGGAGACATTGTACGAAGAGTATTGCTAAGAATGTCTGAAGAAACTTCTTTATTTGAACACAATGTTCTGCCCAAGCTTTCGGTTCCCTTCATATTAAGGACTCCGGATATGTCTGCCATGCACGAAGACACCTCACCAAAGCTGGAAGTTGTTAAAAAGAATTGCAGGATGTATTTGGAATACA

Fln Alignment:

Contig5139___EMFAGLVSE-KGSRLQMLLSYVENLPTGHENGLFYALDLGGTNFRVLRVQLGGSERRVVNQEFEEVPIPQNLMVSTSKELFDYIASELVRFVATEGENFHLPPGQQREIGFTFSFPVKQTSIDSGTLVNWTKGFSVPDMIGKDVVATLNEALQRQGLDMRVAALVNDTVGTLAGGRYWNKDVMAAVILGLELCMLCGTCRCNSRGKGTTSN----IWQHGHKHGVGELLVFTSSCDGI*Q--GS*NSKTINPGYQLFEKLISGFYLGDIVRRVLLRMSEETSLFEHNVLPKLSVPFILRTPDMSAMHEDTSPKLEVVKKNCR
B8LRJ7_________________ELRVGLASEAKSNLLKMVISYVDTLPTGDEKGLFYALDLGGTNFRVLRVQLGGKEGRVIDKEFTEVTIPANLMVGTEKELFDYIASELAKFVTSEGKNFYLEPGRQRELGFTFSFPVHQTAIASGTLIKWSKGFSVSEMVGKDVVVALKEAMERQGLDMHVSALVNDTVGTLAGGRYRDEDVMIAVILG------TGTNACYVEHADAIPKCQGLLPKSGYMVINTEWGNFWSSHLPVTEFDKALDAESINPGDHIFEKLISGMYLGEIVRRLLLKLAEDAALFGDNIPSRLREPYVLTTPNISAMHQDTSPDLKVVENTLK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
274	50	50			1.0
277	50			50	1.0
325	20			80	0.995493
326	20			80	0.995493
327		80		20	0.995493
328		80	20		0.995493
329	80			20	0.995493
575	25			75	0.996473
579			75	25	0.996473
801	25	75			0.996473
805			75	25	0.996473
920		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain