SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5106

Length: 1306 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5106

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15594	67/68

Source	Descriptions	Term	Type	Identity
AutoFact	CHY and CTCHY and RING-type zinc finger protein [Arabidopsis thaliana] gb\|AED93462.1\| CHY and CTCHY and RING-type zinc finger protein [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	ring finger and chy zinc finger domain-containing protein 1-like	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Haemerythrin/HHE cation-binding motif	IPR012312	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg:

Fln protein: MEGGVVFESVQNPLDRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLKDPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGDYFCSTCKFFDDDISKQQYHCDDCGICRVGGRDNFFHCQKCGCCYTVSLQKGHPCVENSMRHNCPVCFEYLFDSLKAITVLNCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDEEIAATPMPYDYQNKMVWILCNDCDMFSEVQFHIVAQKCLKCKSYNTRQTRGPGQ*

Protein Length: 275

Fln nts: AATGTATC_-_ATGGAAGGCGGGGTCGTCTTTGAATCTGTGCAAAACCCACTGGATCGCCTGAACACTGGAAATATGGACCATGGTTGCGCCCATTACAGGAGACGATGTCGGATTCGGGCCCCTTGTTGCAATGAGATCTATGATTGTAGGCACTGTCACAATGAAGCCATGAGCCATTTAAAGGACCCCTTGCTGCGCCATGAGCTCCCAAGATACAAAGTTGAACGGGTTATTTGTTCTCTCTGTGACACTGAGCAAAATGTCAAGCAAGTTTGCGAAAACTGTGGTGTTAAAATGGGGGATTATTTCTGTTCAACGTGCAAGTTCTTTGATGATGATATCTCAAAGCAACAATATCATTGTGATGATTGTGGCATATGCAGGGTAGGAGGCCGGGATAATTTTTTCCATTGCCAGAAATGTGGTTGTTGCTATACGGTTAGTTTGCAGAAGGGCCACCCCTGCGTAGAGAACTCAATGCGCCACAACTGTCCAGTTTGTTTTGAGTATCTTTTTGATTCTTTAAAGGCAATAACTGTTCTGAATTGTGGTCATACAATGCACGGGGAATGTTTAACAGAAATGAAAAAGCACTCTCAATATTCATGTCCAATGTGCTCCAAGTCAGTCTGTGATATGTCCATAATCTGGGAACAACTAGATGAAGAGATTGCAGCAACACCTATGCCTTATGACTATCAAAATAAGATGGTCTGGATCCTATGCAATGATTGTGACATGTTCTCTGAGGTCCAGTTCCATATTGTTGCACAGAAGTGTTTAAAGTGCAAATCTTACAATACTCGCCAAACAAGGGGACCAGGCCAATAG___TGGTACAGTCGTAGGAATCATGGAGTATTTGTATTTATAATGTCAAGTTTGTATCCTCAGTCACGGCTCTGTCATATGCTCAGTAATCTAGCAGTGATTAGAACAGGATTCAGTTGTAGATTCCCTCCATTGATGGGTTATTCATTGGTTAGTGTATTGCTAGGTCTTGGTTCTGTGTTGCAATCTATGCACATTAGAGCTCAGGGTGCTTTTTCTGCAGACCTGTAAGGTGTAATTTACCTTAAGATGTGGTCAATTCTTAATATTCTTTTTGTGCTGCAGAACAGTCCATTTATGTGATTGTACTTTCAAGACCAAAGTAAACTGGTCTATTTAGATGTCCATTACAAGAAACCTGTTGATTTCTTTCAGATTTCTGTCCTCATTTTCTCTTCTTGTAGCATGAACTGGAGGTTAATGGAAAATGTAGATGTCTTGGTCCTGTAGTATGAATTGGGGGTTAATGCAAAAACATT

Fln Alignment:

Contig5106___MEGGVVFESVQNPLDRLNTGNMDHGCAHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLKDPLLRHELPRYKVERVICSLCDTEQNVKQVCENCGVKMGDYFCSTCKFFDDDISKQQYHCDDCGICRVGGRDNFFHCQKCGCCYTVSLQKGHPCVENSMRHNCPVCFEYLFDSLKAITVLNCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDEEIAATPMPYDYQNKMVWILCNDCDMFSEVQFHIVAQKCLKCKSYNTRQTRGPGQ
D5A9X0_________________MEGGVVFGAVQNPLDRLNTGKMEHGCDHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLKDPKQRHELPRYKVERVICSLCDTEQNVNQVCENCGVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVGGRDNFFHCQKCGCCYTVGLQKAHSCVENSMRHNCPVCFEYLFDSLKPIAVLRCGHTMHGDCLSEMQMHSQYSCPMCSKSVCDMSLIWEQLDQEIAATPMPNDYQDKMVWILCNDCDTFSEVQFHIVAQKCLKCKSYNTRQTRGPGQ

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
212	20		80		0.995493
215	80		20		0.995493
216		80		20	0.995493
299	14		85		0.993533
300	14		85		0.993533
301			85	14	0.993533
302	85		14		0.993533
339	10			90	0.90298
342		90	10		0.90298
384		11	88		0.923564
385	11		88		0.923564
387	88			11	0.923564
391			87	12	0.992554
411	25			75	1.0
415		75		25	1.0
641	14	85			0.993533
645	85			14	0.993533
994	11		88		0.923564
995	11		88		0.923564
997		88	11		0.923564
1030		12	87		0.992554
1031	12	87			0.992554
1033		87		12	0.992554
1089	20			80	0.995493
1099	25			75	0.996473
1101	25			50	0.995533
1130	25			75	0.996473
1131		25	75		0.996473
1185	66	33			0.997452
1188		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain