SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5071

Length: 1603 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5071 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27648	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	calcium ion binding protein [Arabidopsis thaliana] emb\|CAB78006.1\| putative protein [Arabidopsis thaliana] emb\|CAB82117.1\| putative protein [Arabidopsis thaliana] gb\|AAL08248.1\| AT4g08810/T32A17_120 [Arabidopsis thaliana] gb\|AAO11571.1\| At4g08810/T32A17_1	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	calcium ion binding protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	73%
Blast2go	nuclear outer membrane-endoplasmic reticulum membrane network	GO:0042175	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXP4

Fln msg: Overlapping hits, possible frame ERROR between 789 and 780, your sequence is shorter than subject: 455 - 568

Fln protein: NVPTAECDPNEAIDCSDPKVLVLIKKFNLKVFKSINIFEYQLPVRGSKPNECDVAWRFRSKKEKSWRKYRDFRRFTLGFDLNCKYKITGAGRWHSGKNARPGKIRKDTGNFSDPIHITSPSSNASFLVNDETINDTVPITTSESSFRKGKYLYYSRGGDYCKGMNQYLWSFLCALGEAQYLNRTFVMDLSVCLSSKYTPSNKDEEGKDFRYYYDFEHLKESTSVVEEGQFLQEWKKWNREHKKDQIPVKKVTDYKVTPMxxxxxKSTIIWRDFDLPEPDNYWYRVCEGSAEKYIERPWHLLWKSKRLMNIVSAISGSLDWDYDAVHVVRGEKVENKEL*PNLDRDTSPDAILSKLTNLIQYQRKLYIATNEPDYNYFDKLRSRYKVSLLDDYKDLWANNSEWYNETTLLNKGQPVDFDGYMRVEVDTEVFLRGKTRVETFNNLTKDCKDGINTC*

Protein Length: 456

Fln nts: AATGTACCCACAGCTGAATGTGATCCAAACGAGGCAATAGACTGTTCAGATCCTAAGGTTTTAGTTTTAATCAAGAAGTTTAATTTGAAAGTTTTCAAAAGTATTAATATCTTTGAGTACCAATTGCCTGTTCGAGGTTCCAAACCGAATGAATGTGATGTAGCATGGAGGTTCAGATCTAAGAAAGAAAAATCATGGAGGAAGTATAGAGATTTTAGAAGATTCACTCTGGGTTTCGATCTAAATTGCAAATATAAGATCACTGGTGCTGGCCGGTGGCACTCGGGAAAGAATGCCCGGCCAGGGAAGATAAGAAAAGACACAGGCAACTTCAGTGATCCAATTCACATCACATCTCCTTCTTCAAATGCTTCTTTTCTGGTTAACGATGAAACCATAAATGACACAGTCCCCATAACCACATCCGAATCCAGTTTCAGGAAGGGAAAATACTTATATTATTCCCGTGGAGGAGATTACTGCAAGGGGATGAACCAATACTTGTGGAGTTTTCTCTGTGCACTGGGAGAGGCGCAATACCTCAATAGAACATTTGTCATGGATCTTAGTGTTTGCCTTTCTTCTAAGTACACTCCAAGCAACAAGGATGAGGAGGGGAAGGACTTTCGGTACTACTATGACTTCGAACATTTGAAGGAGAGCACCTCTGTCGTTGAGGAGGGGCAATTTCTACAAGAATGGAAGAAATGGAATAGGGAACATAAAAAGGATCAAATCCCTGTCAAGAAAGTAACTGACTACAAGGTCACTCCCATGxxxxxxxxxxxxxxxAAAAGTACAATCATTTGGAGGGATTTTGATCTACCAGAGCCTGACAATTATTGGTATCGTGTCTGTGAAGGGTCAGCGGAGAAGTATATTGAGAGGCCCTGGCATCTGCTGTGGAAGTCTAAACGGCTGATGAACATTGTCTCAGCAATCAGTGGAAGCCTTGACTGGGATTATGATGCAGTCCACGTTGTTAGAGGTGAAAAAGTTGAGAACAAGGAACTTTGACCCAATCTAGACAGAGATACATCACCTGATGCAATTTTGAGCAAGCTCACCAATTTAATTCAATATCAGAGGAAATTGTATATTGCTACCAACGAGCCAGATTACAACTATTTTGACAAATTGAGATCCCGTTACAAGGTCTCTCTCCTGGATGATTATAAAGATTTATGGGCGAACAATAGTGAGTGGTACAATGAGACTACTCTTCTCAACAAAGGCCAACCTGTTGATTTTGATGGTTACATGAGAGTGGAAGTAGACACAGAAGTTTTCCTTAGGGGAAAGACTCGTGTGGAGACCTTTAATAACTTGACCAAAGACTGCAAGGATGGAATCAATACATGTTAATCTTGACACCAACAGAGATGAAGAGTGACCGAGGAGCAACGGGCACAACAGATAAATGTGATTAATATCTGAATTCTGGTTGGTCAGTCTTGGCTACTTTCTTTTAACAAGATTAAATTGTACAACTGGCAATTTTTTATTTCTGTTCTCTTAGTCAATTTTATTATACAGTTCTAGAATGTATCAAAGTCTCATTCAATTATCCAGTTGGAAATGCTGTTTCCAAGCTTATCTGTAGA

Fln Alignment:

Contig5071___CDPNEAIDCSDPKVLVLIKKFNLKVFKSINIFEYQLPVRGSKPNECDVAWRFRSKKEKSWRKYRDFRRFTLGFD--LNCKYKITGAGRWHSGKNARPGKIRKDTGNFSDPIHITSPSSNASFLVNDETINDTVPITTSESSFRKGKYLYYSRGGDYCKGMNQYLWSFLCALGEAQYLNRTFVMDLSVCLSSKYTPSNKDEEGKDFRYYYDFEHLKESTSVVEEGQFLQEWKKWNREHKKDQIPVKKVTDYKVTPMRxxxDKSTIIWRDFDLPEPDNYWYRVCEGSAEKYIERPWHLLWKSKRLMNIVSAISGSLDWDYDAVHVVRGEKVENKEL*PNLDRDTSPDAILSKLTNLIQYQRKLYIATNEPDYNYFDKLRSRYKVSLLDDYKDLWANNSEWYNETTLLNKGQPVDFDGYMRVEVDTEVFLRGKTRVETFNNLTKDCKDGINTC
A9NXP4_________________CD-TQTIDCSDHEVGSAMMRFALENFQDIKFYGFGKPVKGSNESTCDMSWRFKPKVGRSDVLYKDYRRFSLQIADAISCNYTVVGVGDWHSGKKARKRKHKKPTGFVPERLKPLTEMPAVG-----EAVNDSVPEVKSEGTFSKGKYLMYSRGGDYCKPMSQYLWSFLCALGEARYLNRTFVMELEVCLSGSNNPGHQDEPGKDFRFYFDFEHLKESASVIDQAQFWTDWNKW---QKQDGLNLNVVNDFKVTPMQxxxDQNTLIWRTFDGVEPDNYWYRVCEGEMENVIQRPWDLIWKSRRLMEIVSAISTRMNWDFDSVHVVRGEKAKNRDLWPNLDQDTSPDALREKLRYRIDENRDVYIATNEMDTGFFEPLRSTYKLHFLDEFNDLWDRNSEWYNETMVLSNGKPVEFDGYMRVEVDTEVFYRGKKQIDTFGDLTKDCKDGAGTC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
239	33		66		0.997452
800	75	25			0.996473
803			75	25	0.996473
1256	25		75		0.996473
1403		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain