SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5067

Length: 369 nt

UniGene Fasta

>biog3_v1.0_unigene5067
AATGTCTACAAAGTGCTTCAAGATGTTTCAACAAACTCAAGATATCAAAGCATATTGAAGTGAACAAACTTGTCAAAGGGCGACCTCTTGATAATCTGGAGTTCATGCAATGGATGAAACGATACTGTGATTCGTTCAACGGCGGGATTGTGAACAATTATAACGCATTAGAAAGGAGAGAAGGCTGTAAAGGGGGAAAGCAAGCGAACCAGAAAGCAGCTTCGGCTGCCACTACCAGGCGACATGATCCTCCCGTTGTAAATGCAGGGCATAAAAGGGCAAGATCTGTAGTCCCAAACAATACTGCAGGGAGCACTGCTTCTGTACAAACTTCTGCCGCAACAGCTACAGCTACTCGCTCAGTCCCGG

Ace file of the UniGene biog3_v1.0_unigene5067

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10012	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	end binding protein 1C [Arabidopsis thaliana] dbj\|BAB09646.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM65311.1\| microtubule-associated protein EB1-like protein [Arabidopsis thaliana] dbj\|BAD43258.1\| unknown protein [Arabidopsis thaliana] gb\|AB	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	microtubule-associated protein rp eb family member 1-like	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	positive gravitropism	GO:0009958	Biological Process	69%
Blast2go	thigmotropism	GO:0009652	Biological Process	69%
Blast2go	microtubule binding	GO:0008017	Molecular Function	69%
Blast2go	phragmoplast	GO:0009524	Cellular Component	69%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	69%
Blast2go	microtubule organizing center	GO:0005815	Cellular Component	69%
Blast2go	spindle	GO:0005819	Cellular Component	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Calponin homology domain	IPR001715	-	0.0	-
Sma3	EB1, C-terminal	IPR004953	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUA3

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 122 - 329

Fln protein: CLQSASRCFNKLKISKHIEVNKLVKGRPLDNLEFMQWMKRYCDSFNGGIVNNYNALERREGCKGGKQANQKAASAATTRRHDPPVVNAGHKRARSVVPNNTAGSTASVQTSAATATATRSVP

Protein Length: 123

Fln nts: AATGTCTACAAAGTGCTTCAAGATGTTTCAACAAACTCAAGATATCAAAGCATATTGAAGTGAACAAACTTGTCAAAGGGCGACCTCTTGATAATCTGGAGTTCATGCAATGGATGAAACGATACTGTGATTCGTTCAACGGCGGGATTGTGAACAATTATAACGCATTAGAAAGGAGAGAAGGCTGTAAAGGGGGAAAGCAAGCGAACCAGAAAGCAGCTTCGGCTGCCACTACCAGGCGACATGATCCTCCCGTTGTAAATGCAGGGCATAAAAGGGCAAGATCTGTAGTCCCAAACAATACTGCAGGGAGCACTGCTTCTGTACAAACTTCTGCCGCAACAGCTACAGCTACTCGCTCAGTCCCGG

Fln Alignment:

Contig5067___FNKLKISKHIEVNKLVKGRPLDNLEFMQWMKRYCDSFNGGIVNNYNALERREGCKGGKQANQKAASAATTRRHDPPVVNAGHKRARSVVPNN
A9NUA3_________________FNKLKISKHIEVSKLVKGRPLDNLEFMQWMKRYCDSFNGGIVNNYNALERREACKGGKQANQKAAPSTTTRRHDPPVVNAGHKRARSVVPNN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain