SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5043

Length: 827 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5043

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene393	10/14
SustainPine v2.0	sp_v2.0_unigene34147	4/14

Source	Descriptions	Term	Type	Identity
AutoFact	Ca2+ antiporter/cation exchanger n=2 Tax=Populus trichocarpa RepID=B9IG90_POPTR	-	-	53%
FL-Next	sp=Vacuolar cation/proton exchanger 1a; Oryza sativa subsp. japonica (Rice).	-	-	58%
Blast2go	ca2+ antiporter cation exchanger	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	cation transport	GO:0006812	Biological Process	77%
Blast2go	transmembrane transport	GO:0055085	Biological Process	77%
Blast2go	cation transmembrane transporter activity	GO:0008324	Molecular Function	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Calcium/proton exchanger	IPR004713	-	-
Sma3	Calcium/proton exchanger superfamily	IPR004798	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
374		28		71	1.0
409	50		50		1.0
410	50		50		1.0
434		50		50	1.0
440	50	50			1.0
444		50		50	1.0
447	50	50			1.0
449	50	12	37		1.0
450	12	87			0.992554
452			88	11	0.923564
464		37		62	1.0
470		37		62	1.0
473		87		12	0.992554
480	28		71		1.0
523	22		77		0.999999
527	22		77		0.999999
530	77		22		0.999999
539	77		22		0.999999
551	22		77		0.999999
556	77		22		0.999999
580		85		14	0.993533
638	16		83		0.994512
640	16			83	0.994512
647	20		80		0.995493
648			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain