SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5037

Length: 346 nt

UniGene Fasta

>biog3_v1.0_unigene5037
GTGGGCATAAGAGTAAAAAATGAACTTCTGCAGGAGAAATTGGTGCATTTTTTGATGGGTCAGGAGGCCTGGAGGAGATCAGGGGGGAAGAATCATGTAATAGTTATGCATCATCCAAATAGCATGGTAATAGCAAGGGAGCAGCTTCGGTCGGCAATGTTCATTGTAGCTGACTTTGGACGATATTCACCATTGGTAGGCAACGTAGAGAAGGATGTTGTGGCTCCTTACAAGCATGTTGTTCCTTCCTTTGCAAAGGATTCTTCATCATTTGAAAGCCGAAGCATTCTCCTTTTCTTTCAAGGTGCTATTTACAGGAAGCATGGTGGATATATTAGACAACATT

Ace file of the UniGene biog3_v1.0_unigene5037

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9335	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Secondary cell wall-related glycosyltransferase family 47 n=1 Tax=Populus tremula x Populus tremuloides RepID=Q5BM99_9ROSI	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	arabinosyltransferase-like protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	77%
Blast2go	megagametogenesis	GO:0009561	Biological Process	77%
Blast2go	transferase activity	GO:0016740	Molecular Function	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Exostosin-like	IPR004263	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV69

Fln msg: Distance to subject end: 165 aas, your sequence is shorter than subject: 115 - 446

Fln protein: VGIRVKNELLQEKLVHFLMGQEAWRRSGGKNHVIVMHHPNSMVIAREQLRSAMFIVADFGRYSPLVGNVEKDVVAPYKHVVPSFAKDSSSFESRSILLFFQGAIYRKHGGYIRQH

Protein Length: 116

Fln nts: GTGGGCATAAGAGTAAAAAATGAACTTCTGCAGGAGAAATTGGTGCATTTTTTGATGGGTCAGGAGGCCTGGAGGAGATCAGGGGGGAAGAATCATGTAATAGTTATGCATCATCCAAATAGCATGGTAATAGCAAGGGAGCAGCTTCGGTCGGCAATGTTCATTGTAGCTGACTTTGGACGATATTCACCATTGGTAGGCAACGTAGAGAAGGATGTTGTGGCTCCTTACAAGCATGTTGTTCCTTCCTTTGCAAAGGATTCTTCATCATTTGAAAGCCGAAGCATTCTCCTTTTCTTTCAAGGTGCTATTTACAGGAAGCATGGTGGATATATTAGACAACATT

Fln Alignment:

Contig5037___LQEKLVHFLMGQEAWRRSGGKNHVIVMHHPNSMVIAREQLRSAMFIVADFGRYSPLVGNVEKDVVAPYKHVVPSFAKDSSS--FESRSILLFFQGAIYRKHGGYIR
A9NV69_________________LQIEVVDMLKRSKSWQRSGGRDHVIVIHHPNAFRFLRDEVNASIFVVADFGRYPRSVSFLRKDVVAPYVHVVDTYVNDDSSDPFESRTMLLYFRGRTKRKDEGFVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain