SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5032

Length: 869 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene5032

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene339	9/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RPAP2_Rtr1 domain containing protein	-	-	3.0e-19	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	uncharacterized protein	-	-	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-
Sma3	Protein of unknown function DUF408	IPR007308	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ23

Fln msg: your sequence is shorter than subject: 278 - 668

Fln protein: MSMRKMLRLLGLKQQRLFANALTEAANAVASGEVDASEAAFRAGICIVPGTDDQDPQKTQIDVEKLGSTQPVWTNLPSTADEEAYNAQECWYDDPPDGFSLELSPFATTWIALDQWITRSSVAYLYGRDDSDADDFSTVNGRGYPHKIVSGGGLSTEIERTVASCISRALPGVVQSLRLPTPISSLEQALGRFLNTMTFIDAIPPFRTNQWRVIVILFLDALSVHRIPSLGSQVMNKRSLILKVLEAAEMTYEEYKIMEDLLIPLGRCPRFSSQSGG*

Protein Length: 279

Fln nts: AATGTCAATGAGGAAAATGTTAAGGCTTCTCGGCTTGAAGCAGCAGAGGCTTTTTGCAAATGCACTAACAGAAGCAGCAAATGCAGTTGCTTCAGGAGAGGTTGATGCCAGTGAAGCAGCTTTCAGGGCTGGAATTTGTATAGTTCCTGGTACAGATGATCAAGATCCCCAAAAGACCCAAATTGATGTAGAAAAATTGGGTTCAACACAACCTGTATGGACAAACTTACCTTCTACTGCAGATGAAGAAGCTTACAATGCACAGGAGTGCTGGTATGATGATCCCCCGGATGGCTTCAGCTTGGAGCTTTCTCCATTTGCAACTACATGGATTGCTTTAGACCAATGGATTACACGTTCATCAGTGGCTTACCTCTATGGTAGAGATGATAGTGATGCCGATGATTTTTCAACAGTCAATGGAAGAGGGTATCCTCACAAGATTGTTTCTGGAGGTGGCTTGTCAACTGAGATTGAAAGGACTGTAGCAAGTTGCATTTCACGTGCCTTGCCAGGAGTGGTTCAGTCTCTAAGGTTACCAACTCCAATTTCCTCTTTGGAGCAAGCTTTGGGGCGCTTCTTAAATACAATGACTTTCATTGATGCAATTCCACCATTTCGAACAAATCAATGGCGTGTGATTGTAATTCTGTTCTTAGATGCTTTATCAGTGCACCGTATCCCATCCCTGGGGTCGCAAGTAATGAACAAACGATCGCTGATACTTAAGGTTCTTGAAGCTGCAGAGATGACATATGAAGAATACAAGATAATGGAAGATTTATTGATACCACTTGGCCGGTGTCCTAGATTTTCATCCCAAAGTGGTGGCTGA___ATCTTTTACACTATGTTGGATCAGTTTCAATCAG

Fln Alignment:

Contig5032___SGEVDASEAAFRAGICIVPGTDDQDPQKTQIDVEKLGSTQPVWTNLPSTADEEAYNAQECWYDDPPDGFSLELSPFATTWIALDQWITRSSVAYLYGRDDSDADDFSTVNGRGYPHKIVSGGGLSTEIERTVASCISRALPGVVQSLRLPTPISSLEQALGRFLNTMTFIDAIPPFRTNQWRVIVILFLDALSVHRIPSLGSQVMNKRSLILKVLEAAEMTYEEYKIMEDLLIPLGRCPRFSSQSGG
B8LQ23_________________SGEVDASEAASKVGICIIPGTDDEDPQKTQNDVEKLDSTQPTWTSLPSTIDEEAYDARECWFDDPPDGFSLELSPFATMWMALDRWITCSSVAHLYGRDDSDADDFSTVNGREYPRKIVSGGGLSTEIERTVASCISRALPAVVQSLRLPTPISSLEQALGRFLNTMTFIDAIPPFRMNQWRVIVVLFLDALSVHHIPSLGPQIMNKRPLIHKVLEAAEMTYEEYKTMKELLIPLGRCPRFSSQSGG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
342	20		80		0.995493
343	80			20	0.995493
344		80	20		0.995493
345		80		20	0.995493
612			33	66	0.997452
613		66		33	0.997452
630	80		20		0.995493
761	20			20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain