SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene5018

Length: 1256 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene5018 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene579	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	Starch synthase VI n=1 Tax=Picea glauca RepID=B8YDY5_PICGL	-	-	88%
FL-Next	tr=Starch synthase VI; Picea glauca (White spruce) (Pinus glauca).	-	-	94%
Blast2go	soluble starch synthase iv-1	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Starch synthase.	EC:2.4.1.21	-	0.0	69%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	69%
Blast2go	Metabolic pathways	01100		0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	glycogen biosynthetic process	GO:0005978	Biological Process	69%
Blast2go	starch synthase activity	GO:0009011	Molecular Function	69%
Blast2go	plastid	GO:0009536	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8YDY5

Fln msg: your sequence is shorter than subject: 389 - 655

Fln protein: SRACLELMQVTATQPDIIHVHEWQTSALSLLYWDMYHNLSVKKPRLILTIHNMEHYGECRQEQLNVCGLDGSIYGTIEKALDDRTIGHNPERLSLLKGGIVYSNAVTTVSPTYVQETLCSGWLSNTLMQYREKYVGILNGIDTVIWDPATDVFLPAHFQAHEIEGKRICKQYVQRGLGLHSNLMTMRKNCTNKGNNSPLVVCITRLVAQKGLHLIRYAIKRVAELGGKFILLGTAPDGRVQGEFEYLSNQCKESNNVRLLLTYSEELSHMLYAAADIVLVPSMYEPCGLAQMIGMRYGAVPIVRRTGGLADTVFDVDHGQSHADQPNGFVFEGIDEGSLNGALERAFKYYNEKPQFWMDLVSKIMQIDNSWEKSAGEYVDLYNSIRVR*

Protein Length: 390

Fln nts: CAGCCGTGCCTGTCTTGAATTGATGCAGGTGACTGCCACCCAGCCTGACATCATTCACGTTCATGAATGGCAGACTAGTGCATTATCTCTTCTTTATTGGGATATGTATCACAATCTTTCTGTTAAGAAACCAAGGCTTATTTTGACAATACATAATATGGAGCATTATGGAGAATGCAGGCAGGAGCAATTAAACGTCTGTGGGCTGGATGGGTCTATCTATGGCACGATAGAGAAGGCATTGGATGATCGCACTATAGGACATAACCCTGAGCGTTTGAGCTTATTGAAGGGAGGTATTGTGTACAGTAATGCAGTCACTACAGTTTCACCAACATATGTTCAGGAAACACTTTGCTCGGGTTGGTTGTCCAATACTTTAATGCAATATCGTGAAAAATATGTTGGCATTCTAAATGGAATTGACACTGTAATATGGGACCCAGCTACTGATGTCTTTTTGCCAGCTCATTTCCAAGCACATGAGATTGAAGGGAAGAGGATTTGCAAGCAATATGTTCAAAGGGGACTTGGTTTACACTCAAATCTTATGACAATGAGAAAAAATTGTACAAATAAGGGAAACAATTCACCATTGGTTGTATGCATTACTAGACTTGTTGCACAAAAGGGCCTTCATCTTATTCGTTATGCAATAAAACGTGTTGCAGAATTGGGTGGAAAATTCATTTTGCTTGGGACAGCACCGGATGGGAGAGTCCAAGGGGAGTTTGAATATCTTTCCAACCAGTGCAAGGAAAGTAACAATGTACGTCTGCTCCTGACATACAGTGAGGAGTTATCACACATGCTGTATGCTGCTGCAGATATTGTCTTAGTTCCTTCCATGTATGAACCATGTGGACTTGCCCAAATGATTGGCATGCGCTATGGAGCAGTTCCAATAGTTCGAAGAACTGGAGGGTTGGCTGATACAGTTTTTGATGTAGATCATGGTCAATCCCATGCCGACCAACCAAATGGATTTGTATTTGAAGGCATAGATGAAGGATCCTTAAATGGGGCTTTGGAACGTGCTTTCAAATACTACAATGAAAAGCCACAATTTTGGATGGATCTTGTTTCTAAGATTATGCAGATTGACAATAGTTGGGAAAAATCAGCTGGGGAATATGTTGACCTATATAACTCTATAAGAGTAAGATAG___TGAATGGAATTGATGGTAAATTCCAATGAAAGCCACAATGTTGGATGGATCCTGTTTCTAAGATTATAGCAGATTGACAGTAGTTGGG

Fln Alignment:

Contig5018___SRACLELMQVTATQPDIIHVHEWQTSALSLLYWDMYHNLSVKKPRLILTIHNMEHYGECRQEQLNVCGLDGSIYGTIEKALDDRTIGHNPERLSLLKGGIVYSNAVTTVSPTYVQETLCSGWLSNTLMQYREKYVGILNGIDTVIWDPATDVFLPAHFQAHEIEGKRICKQYVQRGLGLHSNLMTMRKNCTNKGNNSPLVVCITRLVAQKGLHLIRYAIKRVAELGGKFILLGTAPDGRVQGEFEYLSNQCKESNNVRLLLTYSEELSHMLYAAADIVLVPSMYEPCGLAQMIGMRYGAVPIVRRTGGLADTVFDVDHGQSHADQPNGFVFEGIDEGSLNGALERAFKYYNEKPQFWMDLVSKIMQIDNSWEKSAGEYVDLYNSIRVR
B8YDY5_________________SRACLELMQVTATQPDIIHVHEWQTSALSLLYWDMYHNLSVKKPRLILTIHNMEHYGECRQEQLNICGLDGSVYNTIEKALDDRTIGHNPERLSLLKGGIVYSNAVTTVSPTYVKETLCSGWLSNTLMQYREKYVGILNGIDTVLWDPATDVFLPAHFQAHETEGKRICKQYVQRGLGLDSNLMTMGKKITNKGSNSPLVVCITRLVAQKGLHLIRYAINRVAELGGKFILLGTAPDGRVQEEFEYLSNQCKESNNVRLLLTYSEELSHMLYAAADIVLVPSMYEPCGLAQMIGMRYGAVPIVRRTGGLADTVFDVDHDQSHANQPNGFVFEGIDEGSLNGALERAFQYYNEKPQLWMELISKLMQIDNSWEKSAGEYIDLYNSVRVR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
275		83	16		0.994512
276		83		16	0.994512
301	83		16		0.994512
390		83		16	0.994512
393			83	16	0.994512
499	33			66	0.997452
902	25		75		0.996473
906		75		25	0.996473
924		25		75	0.996473
1253	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain