SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4993

Length: 893 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4993

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6635	15/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF538 domain containing protein	-	-	4.0e-33	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	uncharacterized protein	-	-	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF538	IPR007493	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
6	33		66		0.997452
8			66	33	0.997452
160	66		33		0.997452
166		66		33	0.997452
334	14		85		0.993533
339	85			14	0.993533
385	14			85	0.993533
509			85	14	0.993533
515		16	83		0.994512
516	16		83		0.994512
517		83		16	0.994512
535	83			16	0.994512
544		16		83	0.994512
547		83		16	0.994512
636	20		80		0.995493
638	20	80			0.995493
639			80	20	0.995493
640			80	20	0.995493
688	20		80		0.995493
689	80	20			0.995493
692		80		20	0.995493
705	20			80	0.995493
708			20	80	0.995493
709	80			20	0.995493
800	25			75	0.996473
801			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain