SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4959

Length: 1004 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4959

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2814	12/15
SustainPine v2.0	sp_v2.0_unigene26029	3/15

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q9FNK5.1\|FB285_ARATH RecName: Full=F-box protein At5g46170 dbj\|BAB08262.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL49842.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13195.1\| unknown protein [Arabido	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	f-box domain containing protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	heat acclimation	GO:0010286	Biological Process	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW74

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, atg_distance in limit (1-15): atg_distance = 11, your sequence is shorter than subject: 326 - 361

Fln protein: MSVADQFDRLPNSLVLVIFNKLGDIKALGRCSAVSKRFNGLVPQVEDVVVKVDCVISGEEGGSLSGRSRGFIGLFVKLVIGSIVKPLQALQQILGTKKVVLAEVSHHSPGEVLKNFKEIQNLRIELPGGELGVESCVILGSTSYFCEKNSRKNPLSVVRRTDESNESLDDNGSIPESFYTDGGLKLRVVWTISSLIAASARHYLLQQIISDHPTLQNLILTDADGQGMLCMGKEQLREFRDKPLAASASANRTQVPALNMKLWYAPYLELPEGGGMEGATLVSIRPSDRPIKKDTEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNS

Protein Length: 327

Fln nts: TAATAACGCGAGGTCGGAGGTTCAA_-_ATGTCTGTAGCGGATCAATTTGATCGTCTTCCCAATTCTTTAGTTTTGGTGATCTTTAACAAGTTAGGCGACATCAAAGCCCTAGGGCGGTGCTCGGCTGTTTCGAAACGTTTTAACGGTTTGGTGCCGCAGGTGGAGGATGTCGTGGTGAAGGTTGACTGCGTGATCTCTGGTGAGGAGGGCGGGAGTTTGAGCGGCAGGAGCAGGGGCTTTATAGGTCTTTTTGTTAAACTTGTGATCGGTAGTATAGTTAAGCCCTTACAGGCATTGCAACAGATCCTCGGGACGAAGAAGGTAGTTCTTGCCGAGGTTTCACATCATTCCCCCGGCGAGGTACTGAAAAACTTCAAGGAGATTCAAAATCTTCGCATTGAGCTTCCCGGTGGGGAGCTTGGCGTTGAGAGTTGTGTGATATTGGGATCCACATCGTATTTCTGCGAGAAGAATTCGAGGAAAAATCCTCTTTCTGTTGTTCGAAGAACGGATGAATCTAACGAGAGTTTGGATGATAACGGCAGTATACCAGAATCGTTCTACACCGATGGCGGGTTGAAGCTGAGAGTAGTTTGGACCATAAGCTCGTTAATTGCAGCTTCTGCAAGACATTATTTGTTACAACAAATAATTTCTGATCATCCAACGCTTCAGAATCTCATTCTCACCGATGCAGATGGACAGGGGATGCTCTGTATGGGGAAAGAACAGTTGCGGGAGTTCAGGGACAAGCCGCTAGCAGCCTCGGCTTCTGCTAATCGGACACAGGTTCCAGCTTTGAATATGAAGCTCTGGTATGCTCCATATCTTGAGCTTCCAGAAGGTGGTGGGATGGAGGGAGCAACCCTTGTGTCCATTAGGCCTAGCGATCGACCGATTAAGAAGGATACAGAAGCTTTTCTAGCAGGGGCATTTGATGAGCCATTTGGCGCGGCTGCGAAGGAAATGGTGAAGAAGAGGACTTACCTTTTGGAAATGAATTCTT

Fln Alignment:

Contig4959___NNARSEVQMSVADQFDRLPNSLVLVIFNKLGDIKALGRCSAVSKRFNGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVKLVIGSIVKPLQALQQILGTKKVVLAEVSHHSPGEVLKNFKEIQNLRIELPGGELGVE----------------SCVILGSTSYFCEKNSRKNPLSVVRRTDESNESLDDNGSIPESFYTDGGLKLRVVWTISSLIAASARHYLLQQIISDHPTLQNLILTDADGQGMLCMGKEQLREFRDKPLAASASANRTQVPALNMKLWYAPYLELPEGGGMEGATLVSIRPSDRPIKKDTEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNS
A9NW74_________________NKPSSEVQMPVTDHFDRLPNSLVLVIFNKLGDIKALGRCSAVSKRFNCLVPQVEDVVVKVDCVISSEESGSLSGRSRGFIGLFVKLVIGSIVKPLQALQQILGTKKVVLAEVSHHSPGEVLKNFKEIQNLRIELPGGELGVEDGVLLRWRAEFGSTLESCVILGSTSYFCEKNSRKNPRSAIQRTEEFNEGLDDNGNIPESFYTDGGLKLRVVWTISSLIAASARHYLLQQIISDHPTLQNLVLTDADGQGMLCMGKAQLREFRDKPLAASATASRTQVPALNMKLWYAPYLELPEGGGMEGATLVSIRPSDRPIKKDAEAFLAGAFDEPFGAAAKEMVKKRTYLLEMNS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
342	80		20		0.995493
543	33		66		1.0
546			66	33	1.0
756	12	87			0.992554
758	12		87		0.992554
759		87		12	0.992554
800		14		85	0.993533
802	16			83	0.994512
803		16	83		0.994512
805	83			16	0.994512
954	25		75		0.996473
957	25		75		0.996473
958		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain