SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4948

Length: 352 nt

UniGene Fasta

>biog3_v1.0_unigene4948
AATGTCCTCTACAACGCCAAAGCCCTGCTGCAGTGTTCTCCCGTGTCTCGAACCGGCGACGAGTTGAGAAGCGCTGTGGAGGCGGAGATTGCAGAAATTCAGGCGAAAGTGAGGCAAAATTTCACTTACGAGAGGGAGCTGAGATCGGCTGAGATCCCTCGCGAGCGGCAGCCTAGATCGACTAGCAGTAATTATAATGAGCGTCAAAGATCCAGCAACGGTTACAGAAGGATAGATTACGAGCCTACGACGCCCTCAATGCTAGACATCGTCATGCGTTTGCAGACCGATAACGATGAGCCGCTCACTCCCACTTCGGCCTGGAGGGCCGCAGAGAAGCTGGCCAAGGTTG

Ace file of the UniGene biog3_v1.0_unigene4948

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene484	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6Q1_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	protein binding	-	-	57%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PS55

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 117 - 829

Fln protein: NVLYNAKALLQCSPVSRTGDELRSAVEAEIAEIQAKVRQNFTYERELRSAEIPRERQPRSTSSNYNERQRSSNGYRRIDYEPTTPSMLDIVMRLQTDNDEPLTPTSAWRAAEKLAKV

Protein Length: 118

Fln nts: AATGTCCTCTACAACGCCAAAGCCCTGCTGCAGTGTTCTCCCGTGTCTCGAACCGGCGACGAGTTGAGAAGCGCTGTGGAGGCGGAGATTGCAGAAATTCAGGCGAAAGTGAGGCAAAATTTCACTTACGAGAGGGAGCTGAGATCGGCTGAGATCCCTCGCGAGCGGCAGCCTAGATCGACTAGCAGTAATTATAATGAGCGTCAAAGATCCAGCAACGGTTACAGAAGGATAGATTACGAGCCTACGACGCCCTCAATGCTAGACATCGTCATGCGTTTGCAGACCGATAACGATGAGCCGCTCACTCCCACTTCGGCCTGGAGGGCCGCAGAGAAGCTGGCCAAGGTTG

Fln Alignment:

Contig4948___VLYNAKALLQCSPVSRTGDE-LRSAVEAEIAEIQAKVRQNFTYERELRSAEIPRERQPRSTSSNYNERQRS-SNGYRRIDYEPTTPSMLDIVMRLQT---------DNDEPLTPTSAWRAAEKLAKV
C0PS55_________________VLQNAKIELQ---QTRTGDHSLSLALEAEITEIQARMTNIQTYERSGRAFVLSAQ------SSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTLSATASSNPASISTATSISARRTSEKLAKI

SNPs (tot: 3)

Position	A %	C %	T %	Probability
31	25	50	25	0.995533
32	75	25		0.996473
33	25		25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain