SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4942

Length: 1240 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4942

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22077	1/63
SustainPine v2.0	sp_v2.0_unigene26028	62/63

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl-[acyl-carrier-protein] desaturase n=1 Tax=Picea sitchensis RepID=A9NVD4_PICSI	-	-	73%
FL-Next	sp=Acyl-[acyl-carrier-protein] desaturase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	stearoyl-acp desaturase	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Fatty acid desaturase, type 2	IPR005067	-	-
Sma3	Stearoyl-ACP desaturase, conserved site	IPR005803	-	-
Sma3	Ribonucleotide reductase-related	IPR012348	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
134	25			75	0.996473
135	25	75			0.996473
137			25	75	0.996473
138		75		25	0.996473
169		25		75	0.996473
178		25		75	0.996473
185		75		25	0.996473
191	75		25		0.996473
205		75	25		0.996473
211		75		25	0.996473
212		75	25		0.996473
218	75	25			0.996473
237			33	66	0.997452
254		75		25	0.996473
255		75	25		0.996473
256	75			25	0.996473
260	25		75		0.996473
266	25		75		0.996473
295			33	66	0.997452
322	66		33		0.997452
335			66	33	0.997452
336	66			33	0.997452
560		20	60		0.99255
564	80			20	0.995493
687	20			80	0.995493
690	80			20	0.995493
834	25		75		0.996473
835		25		75	0.996473
836	20		80		0.995493
837	80			20	0.995493
838		80		20	0.995493
869	14		85		0.993533
870	14	85			0.993533
912	14			85	0.993533
921	12			87	0.992554
979	13			86	0.999973
1015		71		28	1.0
1025	25	75			1.0
1054	63		36		1.0
1061	63		36		1.0
1073	10		90		0.90298
1105	66		33		1.0
1117	22		77		0.999999
1118	81	18			0.999994
1121			81	18	0.999994
1123	11		88		0.923564
1135		11		88	0.923564
1207		12	87		0.992554
1209	87			12	0.992554
1210			87	12	0.992554
1212		28	71		1.0
1213	28	71			1.0
1214			71	28	1.0
1215	71			28	1.0
1232	75			25	0.996473
1233	50	25		25	0.995533
1235		66		33	0.997452
1236	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain