SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4932

Length: 274 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4932
AACTGCTAGTATTTGGTACGTGCTGCTTCTGTTATCTACCAACGACCACCGTCATTTCCAGAGGTGGTACCAGATTTTGGTGGAATCGAAAATGCTAGCTCTGGCCATGATCCAAAATTATGAAGCAAGAGGAAGCTCAAGATATATGTTATATTTATTACATGATTAGAACTTTCATTAAATAAATTTCACCATGCAATTTGAATGGCAATAGAGAATGGGTTTCGTCTTTTCCATAAAGATTGGAGTTGCCAAATCTGAAAGAGGATACATT

Ace file of the UniGene biog3_v1.0_unigene4932 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5440	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	nudix hydrolase 15 [Arabidopsis thaliana] ref\|NP_849725.2\| nudix hydrolase 15 [Arabidopsis thaliana] ref\|NP_001031104.1\| nudix hydrolase 15 [Arabidopsis thaliana] dbj\|BAF00412.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE31022.1\| nudix hydrolase 1	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nudix hydrolase 15	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	CoA pyrophosphatase activity	GO:0010945	Molecular Function	0.0	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMI4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 41 - 286

Fln protein: NC*YLVRAASVIYQRPPSFPEVVPDFGGIENASSGHDPKL*

Protein Length: 42

Fln nts: AACTGCTAGTATTTGGTACGTGCTGCTTCTGTTATCTACCAACGACCACCGTCATTTCCAGAGGTGGTACCAGATTTTGGTGGAATCGAAAATGCTAGCTCTGGCCATGATCCAAAATTATGA___AGCAAGAGGAAGCTCAAGATATATGTTATATTTATTACATGATTAGAACTTTCATTAAATAAATTTCACCATGCAATTTGAATGGCAATAGAGAATGGGTTTCGTCTTTTCCATAAAGATTGGAGTTGCCAAATCTGAAAGAGGATACATT

Fln Alignment:

Contig4932___LVRAASVIYQRPPSFPEVVPDFGGIENASSGHDPKL
A9NMI4_________________LVRAASVIYQRPPSFSEVVPDFGGIENANSGHDPKL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
20	33			66	0.997452
21	33			66	0.997452
22			66	33	0.997452
24		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain