SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4924

Length: 485 nt

UniGene Fasta

>biog3_v1.0_unigene4924
ATAACATTATTAGGGTTGGATATGTGCTCCATTTGATGCTTGTTTTTCCTGTGATCCATTTTTCACTTCGGCAGACAATGGATTGCATGGTCTTCAAGGGATCGAAGCCCCTCTCTGAGAGCAACAGGAGGTTTGTCATCTTGACTATCACTGTTTTGGTTTTCTTTACATGGGATCTACTTTGATTCCCAATATTTGGGTAGCTTTTCAGTTCACAGGAGCAACCACAGGTCTATCTTTAGGTTTCATATTTCCTGCTTTGATAGCCCTGAGGTCTCACCCCAACCAACGAGAGGAAAGCTTAGGATTAAGGAAGAAGATTCTCCCGTGGGCTATGCTTGTCATGGCATTGGTTGTGAGCATTATAGGAGTTCTTGGAAATCTTTTAAATCTTACCACTGGAAATAACTAAATATATTCTAGAAGTGGCGCTATGTTGGGAAGCGCCTTATTCTTATAATGTTATATCTCATCAGCCTAATTTT

Ace file of the UniGene biog3_v1.0_unigene4924

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7618	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb\|AAF27127.1\|AC018849_15 hypothetical protein; 45530-44061 [Arabidopsis thaliana] gb\|AAL16241.1\|AF428472_1 At1g80510/T21F11_16 [Arabidopsis thaliana] gb\|AAN31090.1\| At1g80510/T21F11	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	amino acid transporter	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transport	GO:0006865	Biological Process	74%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	74%
Blast2go	integral to membrane	GO:0016021	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Sodium:dicarboxylate symporter	IPR001991	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACG6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 71 aas, putative chimeric sequence, your sequence is shorter than subject: 61 - 456

Fln protein: NIIRVGYVLHLMLVFPVIHFSLRQTMDCMVFKGSKPLSESNRRFVILTITVLVFFTWDLL*

Protein Length: 62

Fln nts: ATAACATTATTAGGGTTGGATATGTGCTCCATTTGATGCTTGTTTTTCCTGTGATCCATTTTTCACTTCGGCAGACAATGGATTGCATGGTCTTCAAGGGATCGAAGCCCCTCTCTGAGAGCAACAGGAGGTTTGTCATCTTGACTATCACTGTTTTGGTTTTCTTTACATGGGATCTACTTTGA___TTCCCAATATTTGGGTAGCTTTTCAGTTCACAGGAGCAACCACAGGTCTATCTTTAGGTTTCATATTTCCTGCTTTGATAGCCCTGAGGTCTCACCCCAACCAACGAGAGGAAAGCTTAGGATTAAGGAAGAAGATTCTCCCGTGGGCTATGCTTGTCATGGCATTGGTTGTGAGCATTATAGGAGTTCTTGGAAATCTTTTAAATCTTACCACTGGAAATAACTAAATATATTCTAGAAGTGGCGCTATGTTGGGAAGCGCCTTATTCTTATAATGTTATATCTCATCAGCCTAATTTT

Fln Alignment:

Contig4924___NIIRVGYVLHLMLVFPVIHFSLRQTMDCMVFKGSKPLSESNRRFVILT
D5ACG6_________________DIVRVTYVVHLMLVFPLIFFALRLNLDGLIFPAKKHLVLDNKRFILIT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain