SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4904

Length: 1382 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4904 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3713	18/19

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter AtABCA1 [Arabidopsis thaliana]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	abc transporter a family member 1	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sulfate-transporting ATPase.	EC:3.6.3.25	-	0.0	79%
Blast2go		EC:3.6.3.3-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	79%
Blast2go	sulfate transmembrane-transporting ATPase activity	GO:0015419	Molecular Function	79%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	ferric-transporting ATPase activity	GO:0015408	Molecular Function	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 222 aas, putative chimeric sequence, your sequence is shorter than subject: 206 - 788

Fln protein: NVGECFGFLGTNGAGKSTTLSMLCGEEHPTGGTAYIFGKDILAHPKAAHQHVGYCPQFDALLELLTVREHLELYARIKGVSKEILDQVVEGKLAEFDLWPQANKPSCSLSGGNKRKLSVAIAMIGDPPLVILDEPSTGMDPIAKRFMWDVISRISTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLCCLGKSSTFENTLWQLS*

Protein Length: 207

Fln nts: AATGTAGGAGAGTGTTTTGGATTTCTCGGCACAAATGGTGCTGGAAAGAGTACAACACTGTCAATGCTATGTGGCGAAGAGCATCCTACGGGAGGAACTGCATATATTTTTGGCAAGGATATTCTTGCACATCCAAAGGCAGCACATCAGCATGTAGGTTATTGTCCTCAGTTTGATGCCCTTCTAGAGTTACTTACTGTTCGAGAACATCTCGAGCTCTATGCACGGATCAAGGGAGTTTCAAAGGAAATATTAGATCAAGTTGTCGAAGGAAAGCTCGCAGAATTTGATTTATGGCCACAAGCAAACAAACCTTCCTGTTCTCTAAGTGGTGGCAATAAACGCAAGTTATCAGTGGCCATAGCAATGATTGGAGATCCTCCTCTCGTCATTTTAGATGAACCTTCAACGGGTATGGACCCTATTGCAAAGCGATTTATGTGGGATGTCATCTCACGTATATCAACTAGGCAAGGGAAAACAGCAGTTATCCTGACAACACATAGCATGAATGAAGCACAGGCCCTTTGTACACGCATTGGAATTATGGTTGGGGGGCGGCTCTGTTGTCTTGGAAAGTCCTCAACATTTGAAAACACGCTTTGGCAACTATCTTGA___ACTTGAGGTGAAACCTGTGGATGTTAGTGTGGTGGAATTAGATAACTTGTGCAATACTCTACATGATATGTTTTTTGACTTTCCGAGCCATTCTAGAGGTATCTTGAGTGATCTGGAAATTTGTATTGGAGGATCAGAGGCTGGCTCCTCCACTCACATGTCAGAAACTAATTTGTCACATGAAATGATCATTGTTGCGGGGCGTAGACTAGGCAATGAGGAGTATGTGCAAAACCTAATTTCAAACAGCCCTTGCATCGATGGAGTTTTTAGTGAGCAATTATCAGAACAATTATTCCGTGATGGTGGCATTCCATTGAGGGTTTTTTGTGAGTGGTGGCTAGCAAAAGAGCATGTAGCAAGAATCAATTCTTTTGTTTTTTCATCATTTCCTGGTGCAACGTTTTCAAGGGCGCAATGGCTACAGCCTTAGTTATCAGCTACCTTATCGAGAAGGGGCATCTCTTGCAGACATATTTGGTCATTTGGAAATGAACAGAGAAATAGCTGGTATTGCTGAATATAGCATTGGTCAGTCGACGTTGGAGACGATTTTCAATCATTTTGCCGCAAACCAGTAAGGAAGCTTAAGTTTCAACTTAGGCTTCTAATGGTGTAGTAGAAAACGTTAGTTATAACTTATGTGGCGTCTAGCTGCAAACATTTTCAAGATGAAGATAGAATATGTGATTTTGTAAAAAGTAGAGGTTAATTTGATTTTTGACAACTAAACAGGATAATGTGAGATATATGTAATATAGTGG

Fln Alignment:

Contig4904___FGFLGTNGAGKSTTLSMLCGEEHPTGGTAYIFGKDILAHPKAAHQH--VGYCPQFDALLELLTVREHLELYARIKGVSKEILDQVVEGKLAEFDLWPQANKPSCSLSGGNKRKLSVAIAMIGDPPLVILDEPSTGMDPIAKRFMWDVISRISTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLCCLGKS
C0PRA1_________________FCLLGPNGAGKTTTINCLTGITPITAGDALIYGHSIKSTSGMSNIRSVMGVCPQFDILWDALSAQEHLYLFAGIKGMPRPAIKSDAENLLSQVKLSEAAHIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPVTRRYVWDIIE--DAKKGR-AIVLTTHSMEEADILSDRIAIMARGKLRCIGTS

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
166	14		85		0.993533
167	14			85	0.993533
171	85			14	0.993533
216	14			85	0.993533
219		85		14	0.993533
360	83			16	0.994512
361	66		16		0.988813
362		83		16	0.994512
392	80			20	0.995493
394	80			20	0.995493
397	20			80	0.995493
398		20	80		0.995493
407	16			83	0.994512
409		83	16		0.994512
410	83			16	0.994512
443		80		20	0.995493
742		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain