SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4894

Length: 1626 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4894

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4076	39/40
SustainPine v2.0	sp_v2.0_unigene61910	1/40

Source	Descriptions	Term	Type	Identity
AutoFact	oxysterol binding protein-related protein 3C [Arabidopsis thaliana] sp\|Q93Y40.1\|ORP3C_ARATH RecName: Full=Oxysterol-binding protein-related protein 3C; AltName: Full=OSBP-related protein 3C gb\|AAK96664.1\| oxysterol-binding protein [Arabidopsis thaliana] g	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	oxysterol-binding protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	steroid metabolic process	GO:0008202	Biological Process	88%
Blast2go	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	oxysterol binding	GO:0008142	Molecular Function	88%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxysterol-binding protein	IPR000648	-	0.0	-
Sma3	Oxysterol-binding protein, conserved site	IPR018494	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNF6

Fln msg: Overlapping hits, possible frame ERROR between 1023 and 990, your sequence is longer than subject: 348 - 175

Fln protein: MSVKTPISRWLMQHHGQFLSILHTRGLGSPLTLFLEKLMKWSIMEGSHLSQSRSATILQWAQPMQKMNILHTVCPQSKTKFLGNSVDIYPLGRTRVVLKKSGEVLDLVPPPSKVHNLIFGRTWIDSPGEMVLTNLTTGDKVVLYFQPCGWFGAGRYEVDGYVYDSKEEPKILMTGKWNRSMTYQPCDAEGEPLPGTELKEVWRVADLPKNDKFQYTYFAHKINSFDTAPKKLLASDSRLRPDRSALEMGDLSKAGAEKSNLExxxxxxxxxxxxxNQPFTPRWFTLTGEVATTPWGDLEVYEYNGKYQEHRASVDDSNFDDGTDSKSMEFNPWQYGNIESGSNKKVE*

Protein Length: 349

Fln nts: TCAGGATGATGCAGAGGAGGAAGCTCATCGAGGTAGATGGCGGAAAGAGGACCAGGATAGTTATTGGAAAATGATGCAAAATATATAGAAGAGCAGATGTCACCTCCATGGTGACACTTCCAGTCATTATCTTTGAGCCTATGACGATGCTTCAGAAGAGTGCTGAGTTAATGGAGTACACTTATTTGCTTGACATGGCAG_-_ATGAGTGTGAAGACCCCTATCTCAAGATGGCTTATGCAGCATCATGGGCAATTTCTGTCTATCCTGCATACCAGAGGACTTGGAAGCCCTTTAACCCTATTCTTGGAGAAACTTATGAAATGGTCAATCATGGAGGGATCACATTTATCGCAGAGCAGGTCAGCCACCATCCTCCAATGGGCTCAGCCTATGCAGAAAATGAACATTTTACATACAGTCTGTCCTCAAAGTAAAACCAAGTTTCTTGGCAACTCTGTGGATATTTACCCACTTGGAAGGACACGTGTGGTGCTAAAGAAATCTGGAGAGGTTCTAGATTTGGTGCCGCCTCCATCTAAAGTTCATAACCTAATTTTTGGACGAACTTGGATTGATTCACCTGGTGAGATGGTGCTGACAAATTTGACTACGGGAGATAAAGTGGTGCTGTACTTTCAGCCATGTGGCTGGTTTGGAGCTGGTCGCTATGAAGTGGATGGGTATGTATACGATTCCAAGGAAGAACCTAAGATATTGATGACAGGAAAATGGAATAGATCGATGACTTACCAGCCTTGTGATGCTGAAGGGGAGCCACTTCCTGGCACAGAGCTTAAAGAGGTATGGAGGGTCGCAGATCTTCCAAAGAACGACAAATTTCAATATACATATTTTGCACACAAAATTAACAGTTTTGATACGGCACCAAAGAAGCTGCTTGCATCAGATTCTCGTCTTCGTCCTGACCGTAGTGCACTAGAGATGGGAGATCTGTCCAAGGCTGGAGCTGAAAAATCCAATCTTGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATCAACCTTTCACTCCTAGGTGGTTCACATTAACTGGAGAAGTTGCCACTACGCCTTGGGGTGATTTGGAAGTGTATGAATATAATGGTAAATATCAAGAACATCGTGCTTCAGTCGATGACTCTAATTTTGATGACGGAACAGATTCAAAATCTATGGAGTTCAACCCATGGCAGTATGGAAACATTGAGTCTGGGAGCAATAAAAAGGTTGAATGA___TATCCTCGTGCTCGAAAATAGCATGATCTCTTAATTCTTTCCTTGTAATGTTATGATTCTGATGGAATTTTGCTGCTTTTCTCTTGTGGGGTTTATGTCATCTTCATTTTGCTAATGTATTTTGAACTCAAGTTAACAGACGATGGAAACAATCTTCCGTGCCATGAGTTGACATGAAATTTTAAAAGATAATGGAAGCTGCCTCCATGTGATCAGAAACTTGGCATATAATTGATATCATGTACATATGTTTTTGTTTAGGGAAGAAAGATAGAACTGCCTATTTTGATCAAATTGTAAATTATATTTTTCATCAGAATTTTTGTGAAGTCTTTTCCAGAGCTTCTGGATTAAGGACTATACTCAAAATATTTGGGACATT

Fln Alignment:

Contig4894___MTGKWNRSMTYQPCDAEGEPLPGTELKEVWRVADLPKNDKFQYTYFAHKINSFDTAPKKLLASDSRLRPDRSALEMGDLSKAGAEKSNLEExxxxxxxxxxxKNQPFTPRWFTLTGEVATTPWGDLEVYEYNGKYQEHRASVDDSNFDDGTDSKSMEFNPWQYGNIESGSNKKVE
A9NNF6_________________MTGKWNRSMSYQPCDAEGEPLPGTELKEVWRVADVPKNDKFQYTHFAHKLNSFATAPKKLLASDSRLRPDRYALELGDLSKAGAEKSNLEExxxxxxxxxxxNNQSFTPRWFTLTGEVATTPWGDLEVYEYNGKYSEHRASVDDSNFDDGADSKSIEFNPWQYGNIEVGSNKKVE

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
90	50		50		1.0
97	14		85		0.993533
277			75	25	0.996473
278	75			25	0.996473
497		60		40	1.0
541	25			75	0.996473
649	20			80	0.995493
650	20		80		0.995493
651			80	20	0.995493
652		80	20		0.995493
707			88	11	0.923564
708	88			11	0.923564
789	28		71		1.0
792		71		28	1.0
793	71			28	1.0
849	75		25		0.996473
880	25			75	0.996473
881		25	75		0.996473
884	75			25	0.996473
891		66		33	0.997452
893	66		33		0.997452
897	66			33	0.997452
899		66	33		0.997452
900			33	66	0.997452
901	33		66		0.997452
903		66	33		0.997452
904	33			66	0.997452
906		25	75		0.996473
907		75		25	0.996473
908	75		25		0.996473
911	85	14			0.993533
912	14		85		0.993533
914			14	85	0.993533
915			14	85	0.993533
918		85	14		0.993533
920	14			85	0.993533
1003	25		75		0.996473
1004			75	25	0.996473
1005			75	25	0.996473
1038		66	33		0.997452
1039		66		33	0.997452
1425	14	28			1.0
1428			66	33	1.0
1498	33	66			0.997452
1500	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain