SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4834

Length: 1098 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4834 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1830	18/20

Source	Descriptions	Term	Type	Identity
AutoFact	Putative arogenate dehydratase n=1 Tax=Capsicum annuum RepID=B5LAT0_CAPAN	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	arogenate dehydratase prephenate dehydratase chloroplastic-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arogenate dehydratase.	EC:4.2.1.91	-	0.0	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400		81%
Blast2go	Biosynthesis of phenylpropanoids	01061		81%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063		81%
Blast2go	Biosynthesis of plant hormones	01070		81%
Blast2go	Metabolic pathways	01100		81%
Blast2go	Biosynthesis of secondary metabolites	01110		81%
Blast2go	Prephenate dehydratase.	EC:4.2.1.51	-	81%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	81%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	L-phenylalanine biosynthetic process	GO:0009094	Biological Process	81%
Blast2go	arogenate dehydratase activity	GO:0047769	Molecular Function	81%
Blast2go	prephenate dehydratase activity	GO:0004664	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Prephenate dehydratase	IPR001086	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Protein of unknown function DUF639	IPR006927	-	-
Sma3	Prephenate dehydratase, conserved site	IPR018528	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLZ1

Fln msg: your sequence is shorter than subject: 321 - 441

Fln protein: LPKPLSITDLAPAPMHGSHLRVAYQGVPGAYSEAAATKAYPSCEPIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHSLHIVGEVQFPVHHCLLALPGVKPENLRRVISHPQALAQCENTLTLMGLNVAREAFDDTAGAAEFVAANNLRDTASIASARAAEIYGMNILADGIQDDVGNVTRFVMLAREPVIPRTDRPFKTSIVFAHEEGTGVLFKVLSAFAFRNINLTKIESRPQRSKPVRVVDDLNGGTAKHFFEYIFYVDFEASMANPRAQNALAEVQEFTTFLRVLGSYPMDIAPLKRANSCSNHH*

Protein Length: 322

Fln nts: ATTGCCCAAGCCTCTGAGCATCACAGATCTGGCCCCTGCTCCAATGCACGGATCCCATCTCCGCGTTGCCTACCAGGGAGTCCCGGGGGCTTACAGCGAGGCAGCCGCGACGAAAGCTTACCCTTCCTGCGAGCCCATACCCTGTGACCAGTTCGAGGTAGCTTTTCAAGCCGTGGAGCTTTGGATTGCAGACAGAGCAGTCCTGCCAGTGGAAAATTCCTTGGGCGGCAGCATACACAGAAACTATGATCTGTTGCTTCGCCATTCGCTGCACATTGTGGGTGAAGTTCAGTTCCCTGTACACCACTGCCTGCTCGCCCTTCCCGGCGTGAAGCCCGAAAATCTCAGACGAGTCATAAGCCATCCCCAAGCTCTGGCCCAGTGCGAGAACACTCTGACTCTCATGGGCCTCAATGTTGCCAGAGAAGCTTTCGACGATACTGCTGGCGCCGCCGAGTTCGTGGCGGCGAACAATCTCAGAGACACCGCATCCATTGCTAGTGCCCGGGCCGCGGAAATCTACGGCATGAATATCCTCGCAGATGGCATTCAAGACGATGTGGGGAACGTTACCAGATTCGTCATGCTCGCCCGGGAGCCTGTGATTCCGAGAACCGACCGCCCCTTCAAGACCAGTATTGTGTTCGCCCACGAGGAAGGGACCGGTGTCCTCTTCAAGGTACTCTCGGCTTTCGCTTTCAGGAATATCAATCTGACCAAGATCGAGAGCAGGCCACAGAGGAGCAAACCCGTCCGGGTCGTTGATGATCTCAATGGGGGCACTGCGAAACACTTCTTTGAGTACATTTTCTACGTTGATTTCGAAGCCTCCATGGCCAATCCCCGCGCGCAGAATGCCCTGGCAGAGGTTCAGGAATTCACCACTTTTCTCAGAGTTCTGGGTAGTTATCCCATGGATATCGCTCCTCTTAAGCGTGCTAATTCTTGTTCCAACCATCATTAG___ATTGCCTTATTTTGTTGTTATTTTTGGGTGTGCGCGACTATACTTCATGTACCAAGCTTCGGCCCCATCGGCCTGATAAGTTGCTACTGTAATGTTTGAAAATGGAAGTAAAATAAATATGTATTTATAACATA

Fln Alignment:

Contig4834___LPKPLSITDLAPAPMHGSHLRVAYQGVPGAYSEAAATKAYPSCEPIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHSLHIVGEVQFPVHHCLLALPGVKPENLRRVISHPQALAQCENTLTLMGLNVAREAFDDTAGAAEFVAANNLRDTASIASARAAEIYGMNILADGIQDDVGNVTRFVMLAREPVIPRTDRPFKTSIVFAHEEGTGVLFKVLSAFAFRNINLTKIESRPQRSKPVRVVDDLNG-GTAKHFFEYIFYVDFEASMANPRAQNALAEVQEFTTFLRVLGSYPMDIAPLKRANSCSN
B8LLZ1_________________LPRPLSLIDLSPPPMHGSPLRVAYQGVPGAYSEAAAKKAYPNSEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLNRVISHPQALSQCELTLTKLGLNVAREAFDDTAGAAEFIALNNLRDTAAIASSRAAELYGMTVLADGIQDDSNNVTRFVMLAREPIIPRTDRPFKTSIVFAQDKGTSVLFKVLSAFAFRNISLTKIESRPHRNQPLRVVDDGNVIGTAKH-FEYMFYVDFEASMADPRAQNALSEVQEFTSFLRVLGSYPMDMTPLNNNSSSSS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
482	16		66		0.988813
483	16		83		0.994512
484	16			83	0.994512
485		83	16		0.994512
486			66	16	0.988813
487	16		83		0.994512
604	40		60		1.0
620		40	60		1.0
703	12		87		0.992554
704	87			12	0.992554
705	12		87		0.992554
707		87		12	0.992554
836			75	25	0.996473
837		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain