SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4833

Length: 1132 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4833

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15252	4/19
SustainPine v2.0	sp_v2.0_unigene30333	15/19

Source	Descriptions	Term	Type	Identity
AutoFact	Transporter, putative n=1 Tax=Ricinus communis RepID=B9R7T6_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	sec14 cytosolic factor family protein	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	CRAL-TRIO domain	IPR001251	-	0.0	-
Sma3		IPR008273	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZA7

Fln msg: Overlapping hits, possible frame ERROR between 426 and 420,

Fln protein: MLRRWYGNKDHHVQDHDERQAKINELRAAIGPLSGHALKFCSDACLRRYLEARNWNVHKxxxxLEETLRWRATYQPEEIHWDEVAMEGETGKVYRADFHDRFRRSVLILNPAKQNTTSEENQLRHLVYLLENAIINLPPDQEQMVWLIDFNGWSLTNYVPVKTVRETTNILQNHYPERLAAAILYNPPRIFEAFWKIVKYFLDSKTFEKVKFVYPKNEECSSFMQQVFDFDKLPTAFGGNNESEYDNEEFSKLMRQDDIKTAQYWMSDDKSSEMNGNLASKSDLKVDADL*

Protein Length: 292

Fln nts: AATGTATTTTGGGTTTCTGAGAAAAAGGTGCACCCACAAAGACATGTGGAAAACTTTTTGATTAGCAGCTTCTGAGAAAGCAACACACTAAGAGGGTAATGCTTTCTTGATTGTATGAATGCATATTAGGAGGAGGACACAGCCAGGGAGGTGGAGAAACCTTCTGGACTTGCCTTGAGCATCTAGATTGTGCAGAAATCCAGGTTGAATTAACTTCTGCACTTTGTGAAACTTAGCGCC_-_ATGTTGCGGAGATGGTATGGTAACAAGGATCATCATGTACAAGATCATGATGAAAGGCAGGCTAAGATAAACGAACTGAGGGCTGCCATTGGTCCTTTGTCTGGCCATGCTTTGAAGTTTTGTTCTGATGCATGCTTAAGACGATATTTGGAAGCTCGGAATTGGAATGTTCATAAAxxxxxxxxxxxxTTAGAAGAGACACTTAGATGGAGGGCAACATATCAACCAGAGGAGATTCACTGGGATGAAGTTGCTATGGAAGGTGAAACTGGGAAGGTGTATAGGGCAGATTTTCATGATCGATTTCGGAGATCCGTCCTTATATTGAATCCTGCAAAACAGAACACTACATCGGAAGAGAATCAACTACGCCACCTTGTTTATCTCCTAGAGAATGCCATTATTAATTTGCCTCCTGATCAGGAGCAGATGGTTTGGCTCATAGACTTCAATGGCTGGTCATTGACCAATTATGTGCCTGTAAAAACAGTTCGTGAAACTACAAATATTTTACAAAATCACTATCCCGAGAGACTTGCTGCAGCTATTCTATACAACCCTCCACGGATCTTTGAAGCTTTTTGGAAGATTGTGAAGTACTTTCTTGATTCAAAGACGTTTGAGAAGGTGAAATTTGTCTACCCCAAAAATGAAGAATGTAGCAGTTTCATGCAACAAGTTTTTGATTTTGATAAGCTTCCGACAGCATTTGGAGGAAATAATGAATCCGAATATGACAATGAAGAGTTCTCCAAACTTATGCGACAAGATGATATAAAGACTGCTCAGTATTGGATGTCAGATGACAAGTCAAGTGAGATGAATGGTAATCTAGCTTCAAAATCAGACTTGAAAGTTGATGCTGATCTCTAA___TAAATAGTATAAGCAACATT

Fln Alignment:

Contig4833___MLRRWYGNKDHHVQDHDERQAKINELRAAIGPLSGHALKFCSDACLRRYLEARNWNVHKSxxMLEETLRWRATYQPEEIHWDEVAMEGETGKVYRADFHDRFRRSVLILNPAKQNTTSEENQLRHLVYLLENAIINLPPDQEQMVWLIDFNGWSLTNYVPVKTVRETTNILQNHYPERLAAAILYNPPRIFEAFWKIVKYFLDSKTFEKVKFVYPKNEECSSFMQQVFDFDKLPTAFGGNNESEYDNEEFSKLMRQDDIKTAQYWMSDDKSSEMNGNLASKSDLKVDAD
A9NZA7_________________MLRRWYGSKDHHVQDHDERQAKINELRATIGPLSGHALKFCSDACLSRYLEARNWNVHKSxxMLEDTLRWRATYQPEEIRWDEVAMEGETGKVYRADFHDRFRRSVLILNPAKQNTTSEDNQLRHLVYLLENAIINLPPEQEQMVWLIDFNGWSLSNYVPVTTVREATNILQNHYPERLAAALLYNPPRIFEAFWKIVKYFLDSKTFAKVKFVYPKNEECTSFMQQVFDFDKLPTAFGGNNESEYDNEEFSKLMRQDDIKTAQYWMSDEKSSEMNGNLASKSDLKVDAD

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
273	33			66	1.0
274		33		66	1.0
275	33		66		1.0
551	16		83		0.994512
697	16		83		0.994512
698	16	83			0.994512
701			83	16	0.994512
732	14		85		0.993533
733	14			85	0.993533
735		85	14		0.993533
736			85	14	0.993533
748	83			16	0.994512
754	28			71	1.0
757		71	28		1.0
758	71			28	1.0
915			83	16	0.994512
1098	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain