SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4830

Length: 524 nt

UniGene Fasta

>biog3_v1.0_unigene4830
AATGTGAGGTTGTTTCTCCCTGACCTTGTTGTCTTCGGGCTGGGCTTTATTTGCCCATGCCTCCAACACATCCAGGATAGAAGATCATGGCAAAGGGTACTTTACCTCTATTAAAGATGATTAATAATTTGGTGAGGGAGAGGGAATAGGATGATTCGGCTCGATCAGCAAAGGGCTCTAGTTTTATCTCGTCAAAAATGCCAACTACTTCAAGCCGAAACAGTAGGCAGATTAGCGAGTTTCTTTATGTTAGTTTACACCGGAAATCTGGTACGTAAAGTATAATATAACGATACAAATAGTGGATGGAGCAACCGATATGGTGGCTTTAGTTGCTCCTGCAGATTGTAATCTGAACAATAATTTTGTGTTGAAGTAGTCACTGCTCTCCATTTTTTAACTGCATTTAATCTTCAAGAACAAGGTTCCATTGTTTAATTTAATGTTCAAGAACAGGGTCTTCCTTTGCTTGTAATTATTGGAGTGCACTTATGAGATCCATATTACAAGATGCTGTAATTGCA

Ace file of the UniGene biog3_v1.0_unigene4830

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9137	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Putative lycopene beta cyclase n=38 Tax=Cupressaceae RepID=Q403Q1_TAXDI	-	-	88%
FL-Next	tr=Putative lycopene beta cyclase; Taxodium distichum var. imbricarium.	-	-	83%
Blast2go	lycopene beta cyclase	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	carotenoid biosynthetic process	GO:0016117	Biological Process	0.0	94%
Blast2go	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	GO:0016705	Molecular Function	0.0	94%

Source	InterPros	Term	Type	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	Lycopene cyclase-type, FAD-binding	IPR008671	-	-
Sma3	Lycopene cyclase, beta/epsilon	IPR010108	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q403Q5

Fln msg: Overlapping hits, possible frame ERROR between 42 and 26, and overlapping frame ERROR between 97 and 81, your sequence is shorter than subject: 51 - 525

Fln protein: NVRLFLPDxxxxxxxALFAHASNTSRxxxxxxxxTLPLLKMINNLVRERE*

Protein Length: 52

Fln nts: AATGTGAGGTTGTTTCTCCCTGACxxxxxxxxxxxxxxxxxxxxxGCTTTATTTGCCCATGCCTCCAACACATCCAGGAxxxxxxxxxxxxxxxxxxxxxGTACTTTACCTCTATTAAAGATGATTAATAATTTGGTGAGGGAGAGGGAATAGGATGATTCGGCTCGATCAGCAAAGGGCTCTAGTTTTATCTCGTCAAAAATGCCAACTACTTCAAGCCGAAACAGTAGGCAGATTAGCGAGTTTCTTTATGTTAGTTTACACCGGAAATCTGGTACGTAAAGTATAATATAACGATACAAATAGTGGATGGAGCAACCGATATGGTGGCTTTAGTTGCTCCTGCAGATTGTAATCTGAACAATAATTTTGTGTTGAAGTAGTCACTGCTCTCCATTTTTTAACTGCATTTAATCTTCAAGAACAAGGTTCCATTGTTTAATTTAATGTTCAAGAACAGGGTCTTCCTTTGCTTGTAATTATTGGAGTGCACTTATGAGATCCATATTACAAGATGCTGTAATTGCA

Fln Alignment:

Contig4830___RLFLPDxxxxxxALFAHASNTSRIxxxxxxTLPLLKMINNLVRERE
Q403Q5_________________RLFLPDxxxxxxALFAHASNTSRLxxxxxxTLPLXKMINNLVADRE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
98	33			66	0.997452
101		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain