SustainPineDB

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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4825

Length: 340 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4825
CAACGATTCCTTCCTTTTCTTCCGTCCTCCCTCAAAAGCCCTCGCACGTTCCGCTCACTTCAATACCCTGGAGCGCCTCGCTTATCTCAAACCCTAGAAATCTTGCTGCCCGTTCATGTCAAACTCGTCGGTTTCACCGGCGACGATCGATTCCAGCTGCAGAACCAGATCGCCAAATACGTTTCGGCCCTGCATTTTGACGACCAGATCCATGTAATTGGCTTCGAACCCCACGGCCTTTCGGTTAGAACAAAGCTCTCCCTGGACGTCACACCGGCCGACGACCGCCTCGCCGATCGGCTCTTCCAGTCGATCCGCTTGCAGATGGAGACTTCACATT

Ace file of the UniGene biog3_v1.0_unigene4825 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22965	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	38%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8TGH9

Fln msg: Distance to subject end: 494 aas, your sequence is shorter than subject: 113 - 654

Fln protein: QRFLPFLPSSLKSPRTFRSLQYPGAPRLSQTLEILLPVHVKLVGFTGDDRFQLQNQIAKYVSALHFDDQIHVIGFEPHGLSVRTKLSLDVTPADDRLADRLFQSIRLQMETSH

Protein Length: 114

Fln nts: CAACGATTCCTTCCTTTTCTTCCGTCCTCCCTCAAAAGCCCTCGCACGTTCCGCTCACTTCAATACCCTGGAGCGCCTCGCTTATCTCAAACCCTAGAAATCTTGCTGCCCGTTCATGTCAAACTCGTCGGTTTCACCGGCGACGATCGATTCCAGCTGCAGAACCAGATCGCCAAATACGTTTCGGCCCTGCATTTTGACGACCAGATCCATGTAATTGGCTTCGAACCCCACGGCCTTTCGGTTAGAACAAAGCTCTCCCTGGACGTCACACCGGCCGACGACCGCCTCGCCGATCGGCTCTTCCAGTCGATCCGCTTGCAGATGGAGACTTCACATT

Fln Alignment:

Contig4825___TLEILLPVHVKLVGFTGDDRFQLQNQIAKYVSALHFDDQIHVI---GFEPHGLSVRTKLSLDVT--PADDRLADRLFQSIR
D8TGH9_________________SLQSTTPVTVKLVGFSSDQKHQLEQQLGRYLEILNKNEHVHVIGTGGTSNHRLNVRSKIEIDVVRDSGSSNLADSMFRAIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain