SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4822

Length: 1297 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4822 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11161	29/31
SustainPine v2.0	sp_v2.0_unigene81837	2/31

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-1-phosphate adenylyltransferase n=3 Tax=Selaginella moellendorffii RepID=D8RB04_SELML	-	-	74%
FL-Next	sp=Glucose-1-phosphate adenylyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Pentose and glucuronate interconversions	00040		87%
Blast2go	Starch and sucrose metabolism	00500		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Glucose-1-phosphate adenylyltransferase.	EC:2.7.7.27	-	87%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	87%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	glycogen biosynthetic process	GO:0005978	Biological Process	87%
Blast2go	cell wall modification	GO:0042545	Biological Process	87%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	87%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	87%
Blast2go	glucose-1-phosphate adenylyltransferase activity	GO:0008878	Molecular Function	87%
Blast2go	cell wall	GO:0005618	Cellular Component	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-
Sma3	ADP-glucose pyrophosphorylase, conserved site	IPR005836	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Glucose-1-phosphate adenylyltransferase	IPR011831	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPE1

Fln msg: Separated hits, possible frame ERROR between 913 and 954, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 39 aas, your sequence is shorter than subject: 432 - 525

Fln protein: M*SRRAASRVFHSLQKNVLECVEQSLLGRKERKGVVAVKCSVLADVAKEIAVAMPEKPPADPKTVLAIILGGGAGTRLFPLTGRRAKPAVPIGGAYRLIDVPMSNCINSGINKIFILTQFNSQSLNRHISKAYGFGNGVNFGDGFVEVLAATQTPGEDGMNWFQGTADAVRQFMWLFEDPRNRHIEHVIILSGDHLYRMDYMDFVQKHIDKEADITLSCVSMDDSRASDFGLMKIDDRGRVLYFSEKPKGADLKAMKVDTTVLGLSPNEADKNPYIASMGVYVFKIDILLKLLRFRYPTANDFxxxxxxxxxxxxxxxQVPKFCFYDAKKPIFTSPRFLPPTKIDKCRVLDSIVSHGCFLQKCNIEHSIVGIRSRLESGVELKDTMMIGADYYETEAEIAALLAEGKVPIGIGKNTKIRNCIIDKNARIGKN

Protein Length: 433

Fln nts: AATGTAGTCCAGAAGAGCTGCCTCGAGGGTTTTCCATTCATTGCAGAAAAATGTTCTGGAATGCGTCGAGCAATCGCTGTTAGGTCGGAAAGAACGTAAGGGTGTTGTCGCGGTCAAGTGCTCTGTTCTTGCTGACGTTGCCAAAGAGATCGCGGTGGCAATGCCTGAGAAGCCTCCTGCAGACCCTAAAACAGTACTTGCTATCATACTAGGCGGTGGAGCAGGAACACGGCTTTTTCCTCTTACAGGAAGAAGAGCCAAACCGGCAGTACCAATTGGAGGCGCATACAGACTCATTGATGTACCAATGAGCAATTGCATTAACAGTGGGATCAATAAGATATTCATCTTAACACAGTTTAATTCTCAGTCTCTAAATCGTCACATTTCCAAGGCATATGGTTTTGGAAATGGTGTGAACTTCGGTGATGGCTTTGTGGAGGTTCTAGCAGCCACTCAGACTCCAGGTGAAGATGGGATGAATTGGTTTCAGGGCACAGCAGATGCCGTGAGGCAATTTATGTGGCTTTTTGAGGATCCGAGGAATAGGCATATAGAACATGTTATTATTTTGTCGGGTGACCATCTCTACCGTATGGACTATATGGACTTTGTACAGAAACACATTGATAAGGAGGCTGATATCACACTTTCATGTGTCTCGATGGATGACAGCCGTGCTTCTGATTTTGGTCTCATGAAAATTGATGATAGAGGCCGCGTGCTTTATTTTAGTGAGAAGCCTAAGGGGGCTGATCTAAAAGCTATGAAAGTGGACACAACAGTGCTTGGTTTGTCACCCAATGAGGCTGACAAAAACCCATACATTGCATCAATGGGTGTATATGTCTTCAAGATAGACATTCTTCTCAAGCTTCTCAGGTTTAGATACCCGACTGCCAATGATTTTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACAGGTTCCAAAGTTCTGTTTTTATGATGCCAAGAAGCCAATCTTCACATCACCCCGTTTTCTGCCACCAACTAAAATAGATAAATGCCGGGTACTGGATTCAATAGTTTCACATGGATGTTTTCTTCAGAAATGCAATATCGAGCATTCCATTGTTGGAATTCGTTCACGTCTGGAATCTGGAGTTGAATTGAAGGATACCATGATGATTGGCGCTGACTATTATGAAACAGAGGCTGAGATTGCAGCACTCCTGGCAGAAGGGAAAGTACCTATTGGAATTGGGAAGAACACAAAAATAAGGAATTGTATCATTGACAAAAATGCAAGGATTGGAAAGAATGT

Fln Alignment:

Contig4822___VKCSVLADVAKEIAVAMPEKPPADPKTVLAIILGGGAGTRLFPLTGRRAKPAVPIGGAYRLIDVPMSNCINSGINKIFILTQFNSQSLNRHISKAYXXXXXXXXXXXXVEVLAATQTPGEDGMNWFQGTADAVRQFMWLFEDPRNRHIEHVIILSGDHLYRMDYMDFVQKHIDKEADITLSCVSMDDSRASDFGLMKIDDRGRVLYFSEKPKGADLKAMKVDTTVLGLSPNEADKNPYIASMGVYVFKIDILLKLLRFRYPTANDFGxxxxxxxxxxxxxxQVPKFCFYDAKKPIFTSPRFLPPTKIDKCRVLDSIVSHGCFLQKCNIEHSIVGIRSRLESGVELKDTMMIGADYYXXXXXXXXXXXEGKVPIGIGKNTKIRNCIIDKNARIGKN
B8LPE1_________________VSMSLLIEVPKESTLKRVESSKADPRTVVSVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHLARAYSFCNGVNFGDGFVEVLAATQRPGEMGKNWFQGTADAVRQFAWLFEDAKNKEIDDILILSGDHLYRMDYMDFVQKHRDSGADITISCIPIDDSRASDFDLMKIDDNGQVLYFSEKPKGDDLKAMGVDTTVLGLSPEDAKKKPYIASMGVYVFKKEILLNLLRWRFHTANDFGxxxxxxxxxxxxxxQPPKFSFYDAKKPIYTSPRNVPPTKVDNCKIVDSIVSHGCFLQNCYIEHSIIGIRSRIESDVSLQDAVMLGADYYETDAEVVSLLAEGKVPVGIGQNTKIRNCIIDKNARIGKN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
109	16		83		0.994512
110		83		16	0.994512
111		83	16		0.994512
218	20		80		0.995493
219	80	20			0.995493
221			80	20	0.995493
222	80			20	0.995493
255	25	75			0.996473
256		75		25	0.996473
257			75	25	0.996473
334	14			85	0.993533
1191		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain