SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4809

Length: 1609 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4809

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5930	32/34
SustainPine v2.0	sp_v2.0_unigene6614	2/34

Source	Descriptions	Term	Type	Identity
AutoFact	Nicotinate phosphoribosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SC93_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	nicotinate phosphoribosyltransferase-like protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nicotinate phosphoribosyltransferase.	EC:2.4.2.11	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760		84%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Nicotinate-nucleotide diphosphorylase (carboxylating).	EC:2.4.2.19	-	84%

Source	KEGGs	Term	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760	84%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	84%
Blast2go	Metabolic pathways	01100	84%

Source	GOs	Term	Type	Identity
Blast2go	nicotinate nucleotide salvage	GO:0019358	Biological Process	84%
Blast2go	NAD biosynthetic process	GO:0009435	Biological Process	84%
Blast2go	nicotinate phosphoribosyltransferase activity	GO:0004516	Molecular Function	84%
Blast2go	nicotinate-nucleotide diphosphorylase (carboxylating) activity	GO:0004514	Molecular Function	84%
Blast2go	cytoplasm	GO:0005737	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Nicotinate phosphoribosyltransferase putative	IPR006405	-	-
Sma3	Nicotinate phosphoribosyltransferase-related	IPR007229	-	-
Sma3	Nicotinate phosphoribosyltransferase-like	IPR015977	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLD0

Fln msg: your sequence is shorter than subject: 501 - 556

Fln protein: NPFGGEYTVFAGLEECIRLAANFKFKQEDIDFLRTLLPTCEDGFFSYLRELNCLDIEIYAIPEGSIVFPKIPLMRVEGSVAVVQLLETPFVNLINYASLVTTNAARHRRVAGNSKFLLEFGLRRAQGPDGAISASKYCYLGGFDGTSNVDAGRRFGIPLGGTHSHAFVSSFMGHDEITDRTLPRNDGKGVCEDFVSLAQHWLSKLQAADSLRGMFSDTSQSEMVAFISYALAFPTQFQALVDTYDVMRSGLPNFCAVALALNELGYKAQGIRLDSGDLAYLSTEARKCFRAIGEEFGVPEFGKMRISASNDINEDTLDALNKQGHEVDAFGIGTHLVTCFAQPALGCVFKLVEIKGQPRMKLSEDVAKVSIPCKKQCYRLYGKEGYPLVDIMTGENEEPPKEGERILCRHTFNESKRANVVPKRVEKLYKCYWSGNSGKPCEPLPKLVEIRERCKKQLAEMRSDHMRELNPTPYKVSVSEELYKLIHDLWLKEAPVGELL*

Protein Length: 502

Fln nts: AGAATCCCTTTGGTGGGGAGTACACTGTCTTCGCTGGGTTAGAAGAGTGTATACGTCTTGCTGCAAATTTCAAGTTTAAACAGGAGGACATTGATTTTTTACGCACACTCTTGCCCACATGTGAGGACGGATTCTTCAGTTATCTGAGAGAACTCAATTGTTTAGACATTGAGATATATGCAATACCGGAAGGTTCCATTGTTTTCCCTAAGATACCCCTCATGAGAGTCGAGGGCTCAGTTGCAGTTGTACAGCTTTTGGAAACACCATTTGTGAATTTGATCAATTATGCATCATTGGTTACTACAAATGCTGCAAGGCATAGGCGTGTTGCTGGGAATTCTAAATTTTTGCTTGAATTTGGACTCCGCCGTGCTCAAGGCCCTGATGGAGCGATCAGTGCATCAAAATATTGTTACCTAGGTGGATTTGATGGAACCAGCAATGTTGATGCTGGGCGACGATTTGGAATACCTCTTGGAGGGACTCACTCACATGCATTTGTCAGCTCATTCATGGGACATGATGAGATCACAGACAGGACACTTCCTAGAAATGATGGTAAAGGTGTTTGTGAAGATTTTGTGAGTTTAGCACAACACTGGCTAAGCAAATTACAAGCGGCAGATTCTCTTAGAGGAATGTTCTCTGACACCAGCCAGAGTGAGATGGTGGCCTTTATATCATATGCTTTGGCTTTTCCAACACAATTTCAGGCTCTTGTGGACACTTATGATGTTATGAGAAGTGGGCTTCCCAATTTCTGTGCAGTTGCTTTGGCACTTAATGAATTAGGCTATAAAGCTCAAGGCATCAGATTGGATTCCGGTGACCTTGCATATTTATCTACGGAGGCACGGAAATGCTTTCGTGCAATCGGAGAGGAATTTGGAGTTCCTGAGTTTGGGAAGATGAGAATTTCTGCTAGCAATGACATCAATGAAGATACACTTGATGCATTGAACAAACAGGGGCATGAGGTGGATGCATTTGGGATAGGTACCCATCTCGTTACATGCTTTGCTCAACCTGCCCTTGGTTGTGTTTTTAAATTGGTAGAGATAAAAGGTCAGCCTCGCATGAAATTATCTGAAGACGTCGCAAAGGTGTCAATTCCTTGCAAAAAGCAGTGTTATAGACTGTATGGGAAAGAGGGCTATCCTTTGGTGGACATAATGACAGGGGAAAATGAAGAGCCACCTAAAGAAGGGGAACGAATTTTGTGTAGGCATACATTCAATGAATCTAAACGAGCAAATGTTGTACCAAAACGAGTGGAGAAACTTTATAAATGCTACTGGTCAGGAAACTCAGGTAAACCATGTGAACCTTTGCCAAAACTAGTAGAAATTCGGGAGCGATGTAAAAAACAGTTGGCTGAAATGCGGTCTGATCACATGCGTGAGTTAAATCCGACACCGTATAAGGTAAGCGTGAGTGAAGAACTTTATAAGCTCATTCATGATCTGTGGTTGAAAGAGGCTCCCGTTGGAGAATTACTTTGA___AGGATTTCAGATACCCTTCCTTTCATTTTCGACAAATTTCTCTGTGATGAAAATTCTATTAAAATGTTTTGCTTGCATCATGCATTGCTCGAAATTCATACATT

Fln Alignment:

Contig4809___NPFGGEYTVFAGLEECIRLAANFKFKQEDIDFLRTLLP-TCEDGFFSYLRELNCLDIEIYAIPEGSIVFPKIPLMRVEGSVAVVQLLETPFVNLINYASLVTTNAARHRRVAGNSKFLLEFGLRRAQGPDGAISASKYCYLGGFDGTSNVDAGRRFGIPLGGTHSHAFVSSFMGHDEITDRTLPRNDGKGVCEDFVSLAQHWLSKLQAADSLRGMFSDTSQSEMVAFISYALAFPTQFQALVDTYDVMRSGLPNFCAVALALNELGYKAQGIRLDSGDLAYLSTEARKCFRAIGEEFGVPEFGKMRISASNDINEDTLDALNKQGHEVDAFGIGTHLVTCFAQPALGCVFKLVEIKGQPRMKLSEDVAKVSIPCKKQCYRLYGKEGYPLVDIMTGENEEPPKEGERILCRHTFNESKRANVVPKRVEKLYKCYWSGNSGKPCEPLPKLVEIRERCKKQLAEMRSDHMRELNPTPYKVSVSEELYKLIHDLWLKEAPVGEL
B8LLD0_________________NPFRGEYTVFAGLEECIRFAATFKFKEEEIAFLHTILPPTCEEGFFDYLRGINCSDLEIYAIPEGSVVFPKIPLIRVEGPIAVVQLLETPFVNLVNYASLVTTNAARHRRVAGSSKILLEFGLRRAQGPDGGISASKYCYLGGFDATSNVDAGRRFGIPLRGTHSHAFVSSFMGPDEITDRALPRSDGTGVCEDFVILTQHWLSKLQASDSLRGTFSETSHSEMAAFISYALAFPTNFQALVDTYDVMRSGLPNFCAVSLALDELGYKAHGIRLDSGDLAYLSTQAREFFRGIEKEFGVPDFGKMPITASNDINEETLDALNKQGHEVDAFGIGTHLVTCFAQPALGCVFKLVEINGQPRMKLSEDVSKVSIPCKKRCYRLYGKDGYPLVDIMTGENEEPPKERERILCRHPFNESKRAYVVPQRVEELYKCYWSGISGKQRESLPTLNEIRERCLRHLAEMRPDHMRELNPTPYKVSVSAKLYDFIHFLWLNEAPVGEL

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
104			20	20	0.99255
166	16		83		0.994512
168		83		16	0.994512
169	83		16		0.994512
269	14	85			0.993533
393	71	28			1.0
395		71	28		1.0
415		16		83	0.994512
416	16		83		0.994512
424	16		83		0.994512
425	16		83		0.994512
428			83	16	0.994512
486	14	14	71		0.984337
489		71	14	14	0.984337
493	14	85			0.993533
495		85		14	0.993533
701	14			85	0.993533
702	14			85	0.993533
704			14	85	0.993533
705		85		14	0.993533
771	20		80		0.995493
881		75	25		0.996473
882			75	25	0.996473
883			75	25	0.996473
900	20	80			0.995493
901	20	80			0.995493
924	40			60	1.0
926	50			50	1.0
928		60		40	1.0
929	16			83	0.994512
932		75		25	0.996473
1185			75	25	0.996473
1186			75	25	0.996473
1469	33			66	0.997452
1474			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain