SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4768

Length: 474 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene4768
AATGTTCTGCCTATTGGGCTAATTCCGAAGGTGGTCAAGTCCTACACATTGCACGATAGTGGGGTTTTCGAGGTCAATCTGGACAAGCCCTGCTACACCAAGTTTGAGAATCCTGTGTATTATGACACATTGATCAAAGGGAATCTCAGTTATGGGCAGATTGCAGGGCTCTCAGGTGTGCAGGCCAAGGAGCTTTTTCTCTGGTTTCCAGTCAAAGTCATTCGTGTTGATATACCCAGCACTGGATTCATCTACTTCGATGTTGGTGTGATTTACAAACAACTATCTCTTTCTTTATTTGAAAACCCTCCAGATTGCCACGATAACATATCCTATGTGCCTAGAACAGCCCTTCAGTAACACTGCACATTGCAAGATCATTATCAGATGTCATCATGACATGCCAAGGAAGAGACGTTTGGTTGTAAAGGAAGATGGGTAGTAGGACCTTTACTCTGTTTGATCAGACACATT

Ace file of the UniGene biog3_v1.0_unigene4768 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4231	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF538 domain containing protein	-	-	2.0e-34	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	uncharacterized protein	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF538	IPR007493	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU94

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 28 aas, your sequence is shorter than subject: 120 - 188

Fln protein: NVLPIGLIPKVVKSYTLHDSGVFEVNLDKPCYTKFENPVYYDTLIKGNLSYGQIAGLSGVQAKELFLWFPVKVIRVDIPSTGFIYFDVGVIYKQLSLSLFENPPDCHDNISYVPRTALQ*

Protein Length: 121

Fln nts: AATGTTCTGCCTATTGGGCTAATTCCGAAGGTGGTCAAGTCCTACACATTGCACGATAGTGGGGTTTTCGAGGTCAATCTGGACAAGCCCTGCTACACCAAGTTTGAGAATCCTGTGTATTATGACACATTGATCAAAGGGAATCTCAGTTATGGGCAGATTGCAGGGCTCTCAGGTGTGCAGGCCAAGGAGCTTTTTCTCTGGTTTCCAGTCAAAGTCATTCGTGTTGATATACCCAGCACTGGATTCATCTACTTCGATGTTGGTGTGATTTACAAACAACTATCTCTTTCTTTATTTGAAAACCCTCCAGATTGCCACGATAACATATCCTATGTGCCTAGAACAGCCCTTCAGTAA___CACTGCACATTGCAAGATCATTATCAGATGTCATCATGACATGCCAAGGAAGAGACGTTTGGTTGTAAAGGAAGATGGGTAGTAGGACCTTTACTCTGTTTGATCAGACACATT

Fln Alignment:

Contig4768___NVLPIGLIPKVVKSYTLHDSGVFEVNLDKPCYTKFENPVYYDTLIKGNLSYGQIAGLSGVQAKELFLWFPVKVIRVDIPSTGFIYFDVGVIYKQLSLSLFENPPDCHDN
A9NU94_________________NGLPKGLLPNAVKNFTVDEQGNFEVHLDKPCYAKFENQVYYEKIVKGNLSYGQIGGLSGIVAQELFLWFPVKGIRVDIPSSGLIYFDVGVVYKQWSLSLFENPPDCKDN

SNPs (tot: 3)

Position	C %	G %	T %	Probability
305	20	80		0.995493
307		80	20	0.995493
308	80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain