SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4767

Length: 464 nt

UniGene Fasta

>biog3_v1.0_unigene4767
AATGTCTGGTGGATTATCTTATTGAGGTCTTATGGAAAGATAACGGGAGATTTTGCCCTCCAGGAGAGAGTGGATGTTCAAACAGGCATTAAATTGATTTTAAAGCTATGTTTAGCAGATGGGTTTGACATGTTCCCAACTTTATTAGTAACTGACGGTTCCTGTATGATTGATCGGCGCATGGGCATTCATGGACACCCTCTTGAAATTCAGGCTTTGTTCTACTCTGCTCTTCGTTGTGCACGAGAAATAATGATTGTGGATGATGGATCAAAGAACTTACTGAGGGCTGTAAATAGCAGGCTAAGTGCACTGGCTTTTCATATCAGAGAGTATTATTGGATTGATACGCAAAAGCTCAATGAAATTTACAGATACAAGACAGAAGAATATACTCCTGATGCTGTCAACAAGTTCAATATTTACCCGGAACAAATTCCGTCATGGCTTGTTGATTGGATGCC

Ace file of the UniGene biog3_v1.0_unigene4767

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6946	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	neutral invertase [Vitis vinifera]	-	-	85%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	84%
Blast2go	neutral invertase	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	95%

Source	KEGGs	Term	Type	Identity
Blast2go	Galactose metabolism	00052		95%
Blast2go	Starch and sucrose metabolism	00500		95%
Blast2go	Metabolic pathways	01100		95%
Blast2go	Sucrose alpha-glucosidase.	EC:3.2.1.48	-	95%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	95%
Blast2go	Metabolic pathways	01100		0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	95%
Blast2go	sucrose alpha-glucosidase activity	GO:0004575	Molecular Function	95%
Blast2go	mitochondrion	GO:0005739	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR006937	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F2DHA4

Fln msg: Distance to subject end: 205 aas, your sequence is shorter than subject: 154 - 619

Fln protein: NVWWIILLRSYGKITGDFALQERVDVQTGIKLILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCAREIMIVDDGSKNLLRAVNSRLSALAFHIREYYWIDTQKLNEIYRYKTEEYTPDAVNKFNIYPEQIPSWLVDWM

Protein Length: 155

Fln nts: AATGTCTGGTGGATTATCTTATTGAGGTCTTATGGAAAGATAACGGGAGATTTTGCCCTCCAGGAGAGAGTGGATGTTCAAACAGGCATTAAATTGATTTTAAAGCTATGTTTAGCAGATGGGTTTGACATGTTCCCAACTTTATTAGTAACTGACGGTTCCTGTATGATTGATCGGCGCATGGGCATTCATGGACACCCTCTTGAAATTCAGGCTTTGTTCTACTCTGCTCTTCGTTGTGCACGAGAAATAATGATTGTGGATGATGGATCAAAGAACTTACTGAGGGCTGTAAATAGCAGGCTAAGTGCACTGGCTTTTCATATCAGAGAGTATTATTGGATTGATACGCAAAAGCTCAATGAAATTTACAGATACAAGACAGAAGAATATACTCCTGATGCTGTCAACAAGTTCAATATTTACCCGGAACAAATTCCGTCATGGCTTGTTGATTGGATGCC

Fln Alignment:

Contig4767___VWWIILLRSYGKITGDFALQERVDVQTGIKLILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCAREIMIVDDGSKNLLRAVNSRLSALAFHIREYYWIDTQKLNEIYRYKTEEYTPDAVNKFNIYPEQIPSWLVDWM
F2DHA4_________________LWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLSDGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCAREMVSTDDGSKNLIRVVNNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSHDAINKFNIYPEQIPSWLADWI

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
95			33	66	0.997452
96			66	33	0.997452
231	25			75	0.996473
232	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain