SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4757

Length: 467 nt

UniGene Fasta

>biog3_v1.0_unigene4757
GAGATTTTTGAAGTTTTTCTCTCGTTTCCTGTGGAAGAATGTTCCTCAGGGAGCTGCCACTACATGCTATGTTGCCTTGCATCCAGACCTGAAAGGAGTTGGTGGCAAGTACTTCGATGATTGTAATGAAATAAACCCAAGCGCCTTTGCCCAGGACAAAGATCTTGCAATGAAGCTCTGGGAATTTAGTATGAGGTTGATCAAATGACTCGTGTATATAGAGAGTGCATACCAGAAACTCGGAAGGCAAATGTTTAGCTCCTAGTGTAACTCGTGATATATATGGCATCAACAGTTCTGCTATTAATGTCTCTCAATATATATAATACATGAGTGCACGGGAGAATATTCAGAGAATAGTGGAAGTACTTGCTTTTGCACAAAAGTCTGATCCAATAGTGTGGACTAGGGTGACTTTATGATTGTGTAGTTTGTAGTAATGATATATATAATGTTTTGATCTATTC

Ace file of the UniGene biog3_v1.0_unigene4757

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24893	5/9
SustainPine v2.0	sp_v2.0_unigene63528	4/9

Source	Descriptions	Term	Type	Identity
AutoFact	Putativepod-specific dehydrogenase SAC25 n=5 Tax=Arabidopsis RepID=Q8LCE7_ARATH	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	retinol dehydrogenase	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	NIF system FeS cluster assembly, NifU, C-terminal	IPR001075	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A841

Fln msg: your sequence is shorter than subject: 69 - 317

Fln protein: RFLKFFSRFLWKNVPQGAATTCYVALHPDLKGVGGKYFDDCNEINPSAFAQDKDLAMKLWEFSMRLIK*

Protein Length: 70

Fln nts: GAGATTTTTGAAGTTTTTCTCTCGTTTCCTGTGGAAGAATGTTCCTCAGGGAGCTGCCACTACATGCTATGTTGCCTTGCATCCAGACCTGAAAGGAGTTGGTGGCAAGTACTTCGATGATTGTAATGAAATAAACCCAAGCGCCTTTGCCCAGGACAAAGATCTTGCAATGAAGCTCTGGGAATTTAGTATGAGGTTGATCAAATGA___CTCGTGTATATAGAGAGTGCATACCAGAAACTCGGAAGGCAAATGTTTAGCTCCTAGTGTAACTCGTGATATATATGGCATCAACAGTTCTGCTATTAATGTCTCTCAATATATATAATACATGAGTGCACGGGAGAATATTCAGAGAATAGTGGAAGTACTTGCTTTTGCACAAAAGTCTGATCCAATAGTGTGGACTAGGGTGACTTTATGATTGTGTAGTTTGTAGTAATGATATATATAATGTTTTGATCTATTC

Fln Alignment:

Contig4757___RFLKFFSRFLWKNVPQGAATTCYVALHPDLKGVGGKYFDDCNEINPSAFAQDKDLAMKLWEFSMRLIK
D5A841_________________RFLNFFSRFLWKSVPQGAATTCYVALHPDLKGVGGKYFDDCNEVNPSLFAQDKDLAMKLWDFSMRLIK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
288	37	62			1.0
291		62	37		1.0
292	62			37	1.0
356		28	71		1.0
358	71			28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain