SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4719

Length: 968 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene4719 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14484	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	Desaturase delta 9 n=2 Tax=Picea RepID=Q8S4Q3_PICGL	-	-	89%
FL-Next	tr=Desaturase delta 9; Picea glauca (White spruce) (Pinus glauca).	-	-	75%
Blast2go	protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on paired donors, with incorporation or reduction of molecular oxygen, With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water.	EC:1.14.19.-	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	alpha-Linolenic acid metabolism	00592		0.0	77%
Blast2go	Biosynthesis of unsaturated fatty acids	01040		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	unsaturated fatty acid biosynthetic process	GO:0006636	Biological Process	77%
Blast2go	photoinhibition	GO:0010205	Biological Process	77%
Blast2go	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	GO:0016717	Molecular Function	77%
Blast2go	16:0 monogalactosyldiacylglycerol desaturase activity	GO:0009979	Molecular Function	77%
Blast2go	binding	GO:0005488	Molecular Function	77%
Blast2go	helicase activity	GO:0004386	Molecular Function	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%
Blast2go	thylakoid	GO:0009579	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Fatty acid desaturase, type 1	IPR005804	-	0.0	-
Sma3	Fatty acid desaturase, type 1, core	IPR015876	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8S4Q3

Fln msg: Overlapping hits, possible frame ERROR between 205 and 198, and overlapping frame ERROR between 572 and 559, Distance to subject end: 98 aas, your sequence is shorter than subject: 323 - 382

Fln protein: MLNVITITLHTPQRRSQAFKYLISSLILLCLCCEFKMPALVLALSLAFSTPARGGESKFVEGKALxxxxLNASSYIASSKNAQPLCVRGRFSWCYGLRMRNNSAGLWRKAIRVQVSAVAEEEGGRILLSDVVVKQKRKPFLLEVREWSLGDIAAAGTVFGMHALCLLAPFTFTWKAFGAFAVLYVxxxxxxxITLSYHRNLSHRSFRLPKWLEYLFAYCGVQAMQGDPLDWVSTHRYHHQYCDSVKDPHSPSEGFWFSHMSWMFDEKSVFDRVGTRNNVSDLEMQPFYRFIRDTYIIHPIAMGLLLYTLGGLPFIIWGMAVRI

Protein Length: 324

Fln nts: A_-_ATGTTGAATGTGATAACAATCACACTCCATACTCCACAAAGGAGGAGCCAGGCATTCAAGTATCTAATCTCATCTCTAATTCTTTTATGCTTATGCTGTGAGTTTAAAATGCCAGCATTAGTATTAGCATTATCATTGGCTTTTTCTACCCCTGCCAGAGGAGGAGAAAGTAAGTTTGTTGAAGGCAAGGCACTCxxxxxxxxxxxxCTGAATGCATCCTCATACATTGCATCATCTAAGAATGCTCAACCATTGTGTGTAAGAGGAAGATTTAGTTGGTGTTATGGGTTAAGAATGAGAAATAATTCAGCTGGTTTATGGAGGAAAGCAATCAGAGTGCAGGTTTCTGCAGTGGCAGAGGAGGAGGGTGGCAGGATTCTGCTGTCAGATGTGGTGGTGAAGCAGAAGAGAAAGCCATTTCTATTGGAGGTGAGAGAGTGGAGTTTAGGAGACATAGCGGCAGCAGGGACTGTGTTTGGCATGCATGCTCTGTGCTTGTTGGCCCCTTTCACATTCACTTGGAAGGCGTTTGGGGCGTTTGCAGTATTGTATGTTGxxxxxxxxxxxxxxxxxxGGATCACACTGTCGTACCACCGGAATCTCTCGCATCGGAGCTTCAGACTTCCCAAATGGCTAGAGTACTTATTTGCCTACTGTGGTGTACAGGCCATGCAGGGTGACCCATTGGATTGGGTCAGTACACATCGCTATCATCATCAATATTGTGATTCAGTCAAGGATCCACACAGCCCCAGTGAAGGATTTTGGTTCAGTCACATGAGCTGGATGTTTGATGAAAAATCTGTATTTGACAGAGTCGGTACAAGAAACAATGTTTCTGATTTAGAGATGCAGCCATTTTATAGATTTATCCGGGATACATATATCATTCATCCCATTGCAATGGGGCTGTTGCTATATACTCTAGGAGGCCTTCCTTTCATAATTTGGGGCATGGCTGTTCGGATAGT

Fln Alignment:

Contig4719___LALSLAFSTPAR-GGESKFVEGKALxxxLNASSYIASSKNAQPLCVRGRFSWCYGLRMRNNSAGLWRKAIRVQVSAVAEEEGGRILLSDVVVKQKRKPFLLEVREWSLGDIAAAGTVFGMHALCLLAPFTFTWKAFGAFAVLYVVxxxxxITLSYHRNLSHRSFRLPKWLEYLFAYCGVQAMQGDPLDWVSTHRYHHQYCDSVKDPHSPSEGFWFSHMSWMFDEKSVFDRVGTRNNVSDLEMQPFYRFIRDTYIIHPIAMGLLLYTLGGLPFIIWGMAVRI
Q8S4Q3_________________LVLSLAFSTPARGGGESRFAEGKALxxxLNASSCNASSKNAQLMCERRILSWCYGIR-RRNSAGLWGKATRVQVSAVAEEEGGRILLSDVVVKKKRKPFLLELREWSLGDIGAAGTVFGMHALCLLAPFTFTWKAFGVFAVLYVVxxxxxITLSYHRNLSHRSFRLPKWLEYLFAYCGVQAVQGDPLDWVSTHRYHHEYCDSVKDPHSPNEGFWYSHMSWMFDEKTMFDRVGTRNNVSDLEMQPFYRFIRDTYIIHPIAMGLLLYALGGPPFVIWGMAVRI

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
164	87			12	0.992554
229	14		85		0.993533
230		14	85		0.993533
233		85		14	0.993533
256	33			66	1.0
257		33	66		1.0
260			66	33	1.0
267		25	75		0.996473
317	25	75			0.996473
318	75			25	0.996473
358		25	75		0.996473
359	25	75			0.996473
361		75		25	0.996473
363	25		75		0.996473
412	20			80	0.995493
414			80	20	0.995493
415	80		20		0.995493
416		80		20	0.995493
489	20	80			0.995493
525		60		40	1.0
530		83	16		0.994512
665	20		80		0.995493
666	80	20			0.995493
746	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain