SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4705

Length: 438 nt

UniGene Fasta

>biog3_v1.0_unigene4705
CAATGTGAGAGATGTCACTTGAGAGCTATGAGATTTGTATCAGTGAAAGGGACGTGTCTATGCATTTGGAGTTCAGAAATGAGCTCAGAAAATTGATGGGCGGGAAGCTTGTAACGGTGCCCAGATTGTTCATCAAGGGCAGATACATTGGTGGTGCTGATGAGGTTCTCAAAATCCATGAAGAAGGTAAAATGGTAGAGCTGCTTGCAGGGATTCCAACGGCCATGGCTGGCAGAGTCTGTGATGGGTGTGGAGGGGTAAGATTTGTTCCTTGCATGGAGTGCAGTGGAAGCTGCAAGCTTGTGAATGATGATAACATGGTGGTGAGGTGCCCTGATTGCAATGAGAATGGCTTGATTCAGTGCCCCATTTGCTGCTGATATCATTTTGAATTCAGCTTTTAAGTTCCGGATGATCCCGTTCCAAAGTACATTTACA

Ace file of the UniGene biog3_v1.0_unigene4705

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26013	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutaredoxin domain containing protein	-	-	2.0e-06	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3		IPR012335	-	-
Sma3	Glutaredoxin-2	IPR015450	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX84

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 126 - 471

Fln protein: M*EMSLESYEICISERDVSMHLEFRNELRKLMGGKLVTVPRLFIKGRYIGGADEVLKIHEEGKMVELLAGIPTAMAGRVCDGCGGVRFVPCMECSGSCKLVNDDNMVVRCPDCNENGLIQCPICC*

Protein Length: 127

Fln nts: CAATGTGAGAGATGTCACTTGAGAGCTATGAGATTTGTATCAGTGAAAGGGACGTGTCTATGCATTTGGAGTTCAGAAATGAGCTCAGAAAATTGATGGGCGGGAAGCTTGTAACGGTGCCCAGATTGTTCATCAAGGGCAGATACATTGGTGGTGCTGATGAGGTTCTCAAAATCCATGAAGAAGGTAAAATGGTAGAGCTGCTTGCAGGGATTCCAACGGCCATGGCTGGCAGAGTCTGTGATGGGTGTGGAGGGGTAAGATTTGTTCCTTGCATGGAGTGCAGTGGAAGCTGCAAGCTTGTGAATGATGATAACATGGTGGTGAGGTGCCCTGATTGCAATGAGAATGGCTTGATTCAGTGCCCCATTTGCTGCTGA___TATCATTTTGAATTCAGCTTTTAAGTTCCGGATGATCCCGTTCCAAAGTACATTTACA

Fln Alignment:

Contig4705___SLESYEICISERDVSMHLEFRNELRKLMGGKLVTVPRLFIKGRYIGGADEVLKIHEEGKMVELLAGIPTAMAGRVCDGCGGVRFVPCMECSGSCKLVNDDNMVVRCPDCNENGLIQCPICC
A9NX84_________________ALESYGICISERDVSMHFEFRNELRKLMGGKLVTVPRLFIKGRYIGGADEALRIHEEGKMAELLAGIPTGMAGIICDGCGGVRFIPCMECSGSCKLVNDDNMVVRCPECNENGLIQCPICC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain