SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4698

Length: 394 nt

UniGene Fasta

>biog3_v1.0_unigene4698
AATGTAGACAGGAATCGGAGGATTTGATTTCGGGAACTGATTATATCAATAGGTTAAGGTCACAACATGCCAAATTAAACCCCGGAACTGAATGGGCAAACCTGGATAGGAAAAAAGAGGGTTTTGGGTTCGATTCTGATTCCGATACAGAACTTGAAAATGGGTTTAGGGTTAGCGAGGGTTTTGGTGGATCCGAGTATGATATATTGAGGAGTAATGACGAGCTTGTTGTAAAAGGCAAGCAGCAGTTACTGCCCGGTCAGATTGAGTATTCTATGTTAAGGGATGCAAATGCAGAGGACCCCTCGAATGCGGTTATACAGTCCGTGGGGTTCCATCGAAATGGGCAGTTGCTACTCACAGCTGGATTTGATAAGAGGTTGAAGTTTTTCCA

Ace file of the UniGene biog3_v1.0_unigene4698

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5570	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=U3 small nucleolar RNA-associated protein 18 homolog; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	u3 small nucleolar rna-associated protein 18 homolog	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FMU5

Fln msg: Distance to subject end: 274 aas, your sequence is shorter than subject: 130 - 546

Fln protein: CRQESEDLISGTDYINRLRSQHAKLNPGTEWANLDRKKEGFGFDSDSDTELENGFRVSEGFGGSEYDILRSNDELVVKGKQQLLPGQIEYSMLRDANAEDPSNAVIQSVGFHRNGQLLLTAGFDKRLKFF

Protein Length: 131

Fln nts: AATGTAGACAGGAATCGGAGGATTTGATTTCGGGAACTGATTATATCAATAGGTTAAGGTCACAACATGCCAAATTAAACCCCGGAACTGAATGGGCAAACCTGGATAGGAAAAAAGAGGGTTTTGGGTTCGATTCTGATTCCGATACAGAACTTGAAAATGGGTTTAGGGTTAGCGAGGGTTTTGGTGGATCCGAGTATGATATATTGAGGAGTAATGACGAGCTTGTTGTAAAAGGCAAGCAGCAGTTACTGCCCGGTCAGATTGAGTATTCTATGTTAAGGGATGCAAATGCAGAGGACCCCTCGAATGCGGTTATACAGTCCGTGGGGTTCCATCGAAATGGGCAGTTGCTACTCACAGCTGGATTTGATAAGAGGTTGAAGTTTTTCCA

Fln Alignment:

Contig4698___RQESEDLISGTDYINRLRSQHAKLNPGTEWANLDRKKEGFGFDSDSDTELENGFRVSEGFGGSEYDILRSNDELVVKGK-QQLLPGQIEYSMLRDANAEDPSNAVIQSVGFHRNGQLLLTAGFDKRLKFF
Q9FMU5_________________KEENEGLISGSEYIARLRAHHAKLNPGTDWARPDSQIVDGESSDDDDTQ-----------DGGVDDILRTNEDLVVKSRGNKLCAGRLEYSKLVDANAADPSNGPINSVHFHQNAQLLLTAGLDRRLRFF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
125			25	75	0.996473
126			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain